The 2.0 version of rSNPBase

Variant report

Variant rs2816218
Chromosome Location chr1:179174878-179174879
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179117800-179186000 Weak transcription Fetal Stomach stomach
2 chr1:179122000-179189400 Weak transcription Primary B cells from cord blood blood
3 chr1:179139400-179196800 Weak transcription Pancreas Pancrea
4 chr1:179146800-179175600 Weak transcription Cortex derived primary cultured neurospheres brain
5 chr1:179148000-179186000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
6 chr1:179148400-179185800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
7 chr1:179150600-179176000 Weak transcription HSMM muscle
8 chr1:179150800-179178000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
9 chr1:179150800-179180400 Weak transcription Breast Myoepithelial Primary Cells Breast
10 chr1:179156400-179177800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
11 chr1:179157400-179197400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
12 chr1:179157400-179197600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
13 chr1:179157600-179177800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
14 chr1:179159400-179176000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
15 chr1:179160200-179186800 Weak transcription Primary hematopoietic stem cells blood
16 chr1:179160800-179188000 Weak transcription Primary T helper cells fromperipheralblood blood
17 chr1:179162800-179177800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
18 chr1:179167800-179177800 Weak transcription Fetal Heart heart
19 chr1:179169000-179197400 Weak transcription NHEK skin
20 chr1:179169600-179181200 Weak transcription GM12878-XiMat blood
21 chr1:179170200-179175200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
22 chr1:179170200-179184000 Weak transcription Fetal Intestine Small intestine
23 chr1:179170200-179197200 Weak transcription Fetal Intestine Large intestine
24 chr1:179170800-179175600 Weak transcription Brain Substantia Nigra brain
25 chr1:179171800-179175000 Weak transcription Brain Anterior Caudate brain
26 chr1:179171800-179175000 Weak transcription Duodenum Smooth Muscle Duodenum
27 chr1:179171800-179186600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
28 chr1:179172200-179186600 Weak transcription Primary hematopoietic stem cells short term culture blood
29 chr1:179172600-179175000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
30 chr1:179172800-179175400 Weak transcription Brain Angular Gyrus brain
31 chr1:179172800-179189800 Weak transcription Primary T cells from cord blood blood
32 chr1:179173000-179187600 Weak transcription Small Intestine intestine
33 chr1:179174600-179175000 Enhancers Fetal Brain Female brain
34 chr1:179174600-179175000 Enhancers Psoas Muscle Psoas
35 chr1:179174600-179175200 Enhancers Primary T helper cells PMA-I stimulated --
36 chr1:179174600-179175400 Enhancers Brain Hippocampus Middle brain
37 chr1:179174600-179175600 Enhancers Fetal Brain Male brain
38 chr1:179174600-179176200 Enhancers Brain Cingulate Gyrus brain
39 chr1:179174600-179176400 Enhancers Skeletal Muscle Male skeletal muscle
40 chr1:179174800-179175000 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
41 chr1:179174800-179175200 Weak transcription Pancreatic Islets Pancreatic Islet
42 chr1:179174800-179176000 Weak transcription Left Ventricle heart
43 chr1:179174800-179176000 Weak transcription Ovary ovary
44 chr1:179174800-179176000 Weak transcription Skeletal Muscle Female skeletal muscle
45 chr1:179174800-179177400 Weak transcription Aorta Aorta
46 chr1:179174800-179177600 Weak transcription Gastric stomach
47 chr1:179174800-179177600 Weak transcription K562 blood
48 chr1:179174800-179184000 Weak transcription Primary T cells fromperipheralblood blood
49 chr1:179174800-179186600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --

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Last update: Aug 31, 2015