The 2.0 version of rSNPBase

Variant report

Variant rs2493123
Chromosome Location chr1:179112923-179112924
allele G/T
Outlinks Ensembl   UCSC
Chromatin state (count:73 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179087800-179113000 Weak transcription Placenta Amnion Placenta Amnion
2 chr1:179093400-179117200 Weak transcription Fetal Stomach stomach
3 chr1:179099200-179114800 Weak transcription Brain Cingulate Gyrus brain
4 chr1:179099600-179116800 Weak transcription Thymus Thymus
5 chr1:179099600-179119400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
6 chr1:179099600-179122600 Weak transcription Stomach Smooth Muscle stomach
7 chr1:179100000-179121000 Weak transcription Rectal Mucosa Donor 31 rectum
8 chr1:179100600-179117200 Weak transcription Fetal Intestine Small intestine
9 chr1:179107600-179119800 Weak transcription Liver Liver
10 chr1:179108200-179113200 Active TSS Foreskin Melanocyte Primary Cells skin01 Skin
11 chr1:179110000-179118400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr1:179110200-179113000 Active TSS HUVEC blood vessel
13 chr1:179110200-179113200 Enhancers Primary T helper cells fromperipheralblood blood
14 chr1:179110200-179116000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
15 chr1:179110200-179121400 Weak transcription Fetal Adrenal Gland Adrenal Gland
16 chr1:179110400-179113200 Enhancers Primary T helper memory cells from peripheral blood 2 blood
17 chr1:179110600-179113800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
18 chr1:179110800-179113000 Enhancers Primary T cells from cord blood blood
19 chr1:179111000-179118200 Weak transcription Primary B cells from cord blood blood
20 chr1:179111400-179116400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
21 chr1:179111400-179117400 Weak transcription Cortex derived primary cultured neurospheres brain
22 chr1:179111400-179118400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
23 chr1:179111400-179121400 Weak transcription iPS-20b Cell Line embryonic stem cell
24 chr1:179111400-179121400 Weak transcription Skeletal Muscle Male skeletal muscle
25 chr1:179111800-179113000 Active TSS Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
26 chr1:179112000-179113200 Enhancers Primary T cells fromperipheralblood blood
27 chr1:179112200-179113000 Weak transcription HSMM muscle
28 chr1:179112200-179113400 Enhancers Primary T helper 17 cells PMA-I stimulated --
29 chr1:179112200-179118800 Weak transcription Fetal Intestine Large intestine
30 chr1:179112200-179121800 Weak transcription Adipose Nuclei Adipose
31 chr1:179112200-179121800 Weak transcription Colon Smooth Muscle Colon
32 chr1:179112200-179124600 Weak transcription Left Ventricle heart
33 chr1:179112400-179113000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
34 chr1:179112400-179113600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
35 chr1:179112400-179113800 Enhancers Primary T helper cells PMA-I stimulated --
36 chr1:179112400-179114200 Weak transcription Primary T killer naive cells fromperipheralblood blood
37 chr1:179112400-179114600 Weak transcription Primary T helper naive cells fromperipheralblood blood
38 chr1:179112400-179114800 Weak transcription Psoas Muscle Psoas
39 chr1:179112400-179115800 Weak transcription NHLF lung
40 chr1:179112400-179116200 Weak transcription ES-WA7 Cell Line embryonic stem cell
41 chr1:179112400-179117200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
42 chr1:179112400-179117400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
43 chr1:179112400-179117400 Weak transcription Primary hematopoietic stem cells blood
44 chr1:179112400-179117600 Weak transcription Right Ventricle heart
45 chr1:179112400-179118400 Weak transcription Breast Myoepithelial Primary Cells Breast
46 chr1:179112400-179119600 Weak transcription HepG2 liver
47 chr1:179112400-179121000 Weak transcription Primary B cells from peripheral blood blood
48 chr1:179112400-179121200 Weak transcription Sigmoid Colon Sigmoid Colon
49 chr1:179112400-179121400 Weak transcription Primary T helper naive cells from peripheral blood blood
50 chr1:179112400-179121400 Weak transcription Small Intestine intestine

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Last update: Aug 31, 2015