The 2.0 version of rSNPBase

Variant report

Variant rs965401
Chromosome Location chr1:179133221-179133222
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:50 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179112400-179139000 Weak transcription K562 blood
2 chr1:179116400-179133400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
3 chr1:179117800-179186000 Weak transcription Fetal Stomach stomach
4 chr1:179119000-179135200 Weak transcription Primary hematopoietic stem cells blood
5 chr1:179120200-179133800 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
6 chr1:179121200-179136200 Weak transcription Duodenum Smooth Muscle Duodenum
7 chr1:179121800-179135800 Weak transcription Primary T helper naive cells from peripheral blood blood
8 chr1:179121800-179138400 Weak transcription Aorta Aorta
9 chr1:179122000-179135000 Weak transcription Primary T killer memory cells from peripheral blood blood
10 chr1:179122000-179139000 Weak transcription Sigmoid Colon Sigmoid Colon
11 chr1:179122000-179189400 Weak transcription Primary B cells from cord blood blood
12 chr1:179122400-179153000 Weak transcription Primary T cells from cord blood blood
13 chr1:179122800-179139000 Weak transcription Lung lung
14 chr1:179122800-179141600 Weak transcription Fetal Intestine Large intestine
15 chr1:179123400-179136200 Weak transcription Colon Smooth Muscle Colon
16 chr1:179124200-179139000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
17 chr1:179127400-179139200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
18 chr1:179128600-179133400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
19 chr1:179130600-179136000 Weak transcription GM12878-XiMat blood
20 chr1:179132000-179135000 Enhancers HUES48 Cell Line embryonic stem cell
21 chr1:179132200-179134000 Enhancers iPS-15b Cell Line embryonic stem cell
22 chr1:179132200-179134600 Enhancers ES-I3 Cell Line embryonic stem cell
23 chr1:179132200-179134800 Enhancers iPS-20b Cell Line embryonic stem cell
24 chr1:179132200-179134800 Enhancers HMEC breast
25 chr1:179132400-179133800 Enhancers iPS-18 Cell Line embryonic stem cell
26 chr1:179132400-179135200 Enhancers NHEK skin
27 chr1:179132600-179133800 Weak transcription HUES6 Cell Line embryonic stem cell
28 chr1:179132600-179136000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
29 chr1:179132600-179139000 Weak transcription Breast Myoepithelial Primary Cells Breast
30 chr1:179132800-179135600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
31 chr1:179133000-179133400 Flanking Active TSS HSMM muscle
32 chr1:179133000-179134000 Enhancers Hela-S3 cervix
33 chr1:179133000-179134600 Enhancers H9 Cell Line embryonic stem cell
34 chr1:179133000-179134600 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
35 chr1:179133000-179134600 Enhancers Muscle Satellite Cultured Cells --
36 chr1:179133000-179134600 Enhancers HepG2 liver
37 chr1:179133000-179134600 Enhancers HSMMtube muscle
38 chr1:179133000-179134600 Enhancers NH-A brain
39 chr1:179133000-179134600 Enhancers NHDF-Ad bronchial
40 chr1:179133000-179134800 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
41 chr1:179133000-179135000 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
42 chr1:179133000-179135000 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
43 chr1:179133000-179135000 Enhancers A549 lung
44 chr1:179133200-179133400 Enhancers Fetal Brain Male brain
45 chr1:179133200-179133600 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
46 chr1:179133200-179133800 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
47 chr1:179133200-179133800 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
48 chr1:179133200-179133800 Enhancers NHLF lung
49 chr1:179133200-179134000 Enhancers HUES64 Cell Line embryonic stem cell
50 chr1:179133200-179134000 Enhancers Osteobl bone

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015