The 2.0 version of rSNPBase

Variant report

Variant rs2066279
Chromosome Location chr1:179172856-179172857
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:42 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179117800-179186000 Weak transcription Fetal Stomach stomach
2 chr1:179122000-179189400 Weak transcription Primary B cells from cord blood blood
3 chr1:179139400-179196800 Weak transcription Pancreas Pancrea
4 chr1:179146800-179175600 Weak transcription Cortex derived primary cultured neurospheres brain
5 chr1:179147600-179174600 Weak transcription Psoas Muscle Psoas
6 chr1:179148000-179186000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
7 chr1:179148400-179185800 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
8 chr1:179150600-179176000 Weak transcription HSMM muscle
9 chr1:179150800-179178000 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
10 chr1:179150800-179180400 Weak transcription Breast Myoepithelial Primary Cells Breast
11 chr1:179156400-179177800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
12 chr1:179157400-179197400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
13 chr1:179157400-179197600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
14 chr1:179157600-179177800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
15 chr1:179159400-179176000 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
16 chr1:179160200-179186800 Weak transcription Primary hematopoietic stem cells blood
17 chr1:179160400-179174600 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
18 chr1:179160800-179188000 Weak transcription Primary T helper cells fromperipheralblood blood
19 chr1:179162800-179177800 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr1:179167800-179177800 Weak transcription Fetal Heart heart
21 chr1:179169000-179197400 Weak transcription NHEK skin
22 chr1:179169400-179174600 Weak transcription Fetal Brain Female brain
23 chr1:179169600-179181200 Weak transcription GM12878-XiMat blood
24 chr1:179170200-179175200 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
25 chr1:179170200-179184000 Weak transcription Fetal Intestine Small intestine
26 chr1:179170200-179197200 Weak transcription Fetal Intestine Large intestine
27 chr1:179170400-179174400 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
28 chr1:179170800-179175600 Weak transcription Brain Substantia Nigra brain
29 chr1:179171200-179174400 Weak transcription Ovary ovary
30 chr1:179171800-179174600 Weak transcription Primary T helper cells PMA-I stimulated --
31 chr1:179171800-179175000 Weak transcription Brain Anterior Caudate brain
32 chr1:179171800-179175000 Weak transcription Duodenum Smooth Muscle Duodenum
33 chr1:179171800-179186600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
34 chr1:179172000-179174400 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
35 chr1:179172200-179186600 Weak transcription Primary hematopoietic stem cells short term culture blood
36 chr1:179172400-179173000 Enhancers Small Intestine intestine
37 chr1:179172600-179174600 Weak transcription Brain Hippocampus Middle brain
38 chr1:179172600-179174600 Weak transcription Left Ventricle heart
39 chr1:179172600-179175000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
40 chr1:179172800-179174600 Weak transcription Pancreatic Islets Pancreatic Islet
41 chr1:179172800-179175400 Weak transcription Brain Angular Gyrus brain
42 chr1:179172800-179189800 Weak transcription Primary T cells from cord blood blood

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Last update: Aug 31, 2015