Variant report

Variant	rs377785
Chromosome Location	chr1:179224067-179224068
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 95 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:94)

rs_ID	r²[population]
rs1078872	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10913690	0.86[EUR][1000 genomes]
rs10913695	0.89[EUR][1000 genomes]
rs10913697	0.89[EUR][1000 genomes]
rs1173077	0.99[EUR][1000 genomes]
rs12130276	0.89[EUR][1000 genomes]
rs1763022	0.91[ASN][1000 genomes]
rs1807916	0.85[ASN][1000 genomes]
rs1826183	0.85[ASN][1000 genomes]
rs1856967	0.88[EUR][1000 genomes]
rs1856968	0.89[EUR][1000 genomes]
rs1858551	0.89[EUR][1000 genomes]
rs2050923	0.92[ASN][1000 genomes]
rs2066279	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2087559	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2130576	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2171958	0.88[ASN][1000 genomes]
rs2171959	0.89[EUR][1000 genomes]
rs2258217	0.90[EUR][1000 genomes]
rs2258221	0.88[EUR][1000 genomes]
rs2306941	0.86[ASN][1000 genomes]
rs2486995	0.89[EUR][1000 genomes]
rs2486997	0.89[EUR][1000 genomes]
rs2487563	0.89[ASN][1000 genomes]
rs2493124	0.89[EUR][1000 genomes]
rs2636265	0.89[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636272	0.86[ASN][1000 genomes]
rs2636274	0.91[EUR][1000 genomes]
rs2636276	0.92[EUR][1000 genomes]
rs2636280	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2636281	0.98[EUR][1000 genomes]
rs2636282	0.87[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2636287	0.89[EUR][1000 genomes]
rs2791940	0.91[EUR][1000 genomes]
rs2791941	0.92[EUR][1000 genomes]
rs2791942	0.80[EUR][1000 genomes]
rs2791943	0.91[EUR][1000 genomes]
rs2793793	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2793795	0.84[EUR][1000 genomes]
rs2793796	0.90[EUR][1000 genomes]
rs2793797	0.89[EUR][1000 genomes]
rs2793798	0.89[EUR][1000 genomes]
rs2793799	0.98[EUR][1000 genomes]
rs2793801	0.88[ASN][1000 genomes]
rs2793802	0.90[ASN][1000 genomes]
rs2793803	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2793806	0.94[EUR][1000 genomes]
rs2793810	0.85[ASN][1000 genomes]
rs2793812	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2793813	0.85[ASN][1000 genomes]
rs2816167	0.98[EUR][1000 genomes]
rs2816168	0.90[ASN][1000 genomes]
rs2816183	0.91[EUR][1000 genomes]
rs2816185	0.90[EUR][1000 genomes]
rs2816186	0.92[EUR][1000 genomes]
rs2816187	0.90[EUR][1000 genomes]
rs2816189	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2816196	0.90[EUR][1000 genomes]
rs2816197	0.85[AMR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2816198	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2816199	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2816200	0.82[ASN][1000 genomes]
rs2816201	0.83[ASN][1000 genomes]
rs2816202	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2816203	0.85[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2816204	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2816206	0.97[EUR][1000 genomes]
rs2816207	0.88[ASN][1000 genomes]
rs2816208	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2816209	0.97[EUR][1000 genomes]
rs2816210	0.95[EUR][1000 genomes]
rs2816211	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2816212	0.86[ASN][1000 genomes]
rs2816214	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2816218	0.88[ASN][1000 genomes]
rs3121198	0.81[ASN][1000 genomes]
rs3122376	0.83[ASN][1000 genomes]
rs3210839	0.85[EUR][1000 genomes]
rs36122838	0.87[EUR][1000 genomes]
rs3813642	0.86[EUR][1000 genomes]
rs3813643	0.86[EUR][1000 genomes]
rs411266	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs413613	0.92[ASN][1000 genomes]
rs434283	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs451088	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4651012	0.87[EUR][1000 genomes]
rs4651013	0.87[EUR][1000 genomes]
rs915337	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9425839	0.88[ASN][1000 genomes]
rs965401	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9726961	0.89[EUR][1000 genomes]
rs9727252	0.89[EUR][1000 genomes]
rs9728480	0.89[EUR][1000 genomes]
rs9729199	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1005278	chr1:179197645-179371395	Weak transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179218600-179225600	Weak transcription	Spleen	Spleen

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links