The 2.0 version of rSNPBase

Variant report

Variant rs2258221
Chromosome Location chr1:179113369-179113370
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:68 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179093400-179117200 Weak transcription Fetal Stomach stomach
2 chr1:179099200-179114800 Weak transcription Brain Cingulate Gyrus brain
3 chr1:179099600-179116800 Weak transcription Thymus Thymus
4 chr1:179099600-179119400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
5 chr1:179099600-179122600 Weak transcription Stomach Smooth Muscle stomach
6 chr1:179100000-179121000 Weak transcription Rectal Mucosa Donor 31 rectum
7 chr1:179100600-179117200 Weak transcription Fetal Intestine Small intestine
8 chr1:179107600-179119800 Weak transcription Liver Liver
9 chr1:179110000-179118400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr1:179110200-179116000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
11 chr1:179110200-179121400 Weak transcription Fetal Adrenal Gland Adrenal Gland
12 chr1:179110600-179113800 Enhancers Primary T helper memory cells from peripheral blood 1 blood
13 chr1:179111000-179118200 Weak transcription Primary B cells from cord blood blood
14 chr1:179111400-179116400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
15 chr1:179111400-179117400 Weak transcription Cortex derived primary cultured neurospheres brain
16 chr1:179111400-179118400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
17 chr1:179111400-179121400 Weak transcription iPS-20b Cell Line embryonic stem cell
18 chr1:179111400-179121400 Weak transcription Skeletal Muscle Male skeletal muscle
19 chr1:179112200-179113400 Enhancers Primary T helper 17 cells PMA-I stimulated --
20 chr1:179112200-179118800 Weak transcription Fetal Intestine Large intestine
21 chr1:179112200-179121800 Weak transcription Adipose Nuclei Adipose
22 chr1:179112200-179121800 Weak transcription Colon Smooth Muscle Colon
23 chr1:179112200-179124600 Weak transcription Left Ventricle heart
24 chr1:179112400-179113600 Enhancers IMR90 fetal lung fibroblasts Cell Line lung
25 chr1:179112400-179113800 Enhancers Primary T helper cells PMA-I stimulated --
26 chr1:179112400-179114200 Weak transcription Primary T killer naive cells fromperipheralblood blood
27 chr1:179112400-179114600 Weak transcription Primary T helper naive cells fromperipheralblood blood
28 chr1:179112400-179114800 Weak transcription Psoas Muscle Psoas
29 chr1:179112400-179115800 Weak transcription NHLF lung
30 chr1:179112400-179116200 Weak transcription ES-WA7 Cell Line embryonic stem cell
31 chr1:179112400-179117200 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
32 chr1:179112400-179117400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
33 chr1:179112400-179117400 Weak transcription Primary hematopoietic stem cells blood
34 chr1:179112400-179117600 Weak transcription Right Ventricle heart
35 chr1:179112400-179118400 Weak transcription Breast Myoepithelial Primary Cells Breast
36 chr1:179112400-179119600 Weak transcription HepG2 liver
37 chr1:179112400-179121000 Weak transcription Primary B cells from peripheral blood blood
38 chr1:179112400-179121200 Weak transcription Sigmoid Colon Sigmoid Colon
39 chr1:179112400-179121400 Weak transcription Primary T helper naive cells from peripheral blood blood
40 chr1:179112400-179121400 Weak transcription Small Intestine intestine
41 chr1:179112400-179121600 Weak transcription Primary T killer memory cells from peripheral blood blood
42 chr1:179112400-179133000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
43 chr1:179112400-179139000 Weak transcription K562 blood
44 chr1:179112600-179114000 Enhancers Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
45 chr1:179112600-179116400 Enhancers Muscle Satellite Cultured Cells --
46 chr1:179112800-179113400 Enhancers A549 lung
47 chr1:179112800-179113600 Enhancers Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
48 chr1:179112800-179113600 Enhancers HMEC breast
49 chr1:179112800-179114200 Enhancers Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
50 chr1:179112800-179114400 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015