The 2.0 version of rSNPBase

Variant report

Variant rs2816185
Chromosome Location chr1:179117740-179117741
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:59 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179099600-179119400 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
2 chr1:179099600-179122600 Weak transcription Stomach Smooth Muscle stomach
3 chr1:179100000-179121000 Weak transcription Rectal Mucosa Donor 31 rectum
4 chr1:179107600-179119800 Weak transcription Liver Liver
5 chr1:179110000-179118400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
6 chr1:179110200-179121400 Weak transcription Fetal Adrenal Gland Adrenal Gland
7 chr1:179111000-179118200 Weak transcription Primary B cells from cord blood blood
8 chr1:179111400-179118400 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
9 chr1:179111400-179121400 Weak transcription iPS-20b Cell Line embryonic stem cell
10 chr1:179111400-179121400 Weak transcription Skeletal Muscle Male skeletal muscle
11 chr1:179112200-179118800 Weak transcription Fetal Intestine Large intestine
12 chr1:179112200-179121800 Weak transcription Adipose Nuclei Adipose
13 chr1:179112200-179121800 Weak transcription Colon Smooth Muscle Colon
14 chr1:179112200-179124600 Weak transcription Left Ventricle heart
15 chr1:179112400-179118400 Weak transcription Breast Myoepithelial Primary Cells Breast
16 chr1:179112400-179119600 Weak transcription HepG2 liver
17 chr1:179112400-179121000 Weak transcription Primary B cells from peripheral blood blood
18 chr1:179112400-179121200 Weak transcription Sigmoid Colon Sigmoid Colon
19 chr1:179112400-179121400 Weak transcription Primary T helper naive cells from peripheral blood blood
20 chr1:179112400-179121400 Weak transcription Small Intestine intestine
21 chr1:179112400-179121600 Weak transcription Primary T killer memory cells from peripheral blood blood
22 chr1:179112400-179133000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
23 chr1:179112400-179139000 Weak transcription K562 blood
24 chr1:179112800-179119000 Weak transcription Primary hematopoietic stem cells short term culture blood
25 chr1:179113200-179133000 Weak transcription Hela-S3 cervix
26 chr1:179113600-179121600 Weak transcription Ovary ovary
27 chr1:179113800-179121200 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
28 chr1:179114200-179119800 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
29 chr1:179115000-179119600 Weak transcription A549 lung
30 chr1:179115600-179121000 Weak transcription Primary T cells from cord blood blood
31 chr1:179116000-179121200 Weak transcription Psoas Muscle Psoas
32 chr1:179116000-179121600 Weak transcription Fetal Heart heart
33 chr1:179116200-179118400 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
34 chr1:179116200-179118600 Weak transcription NH-A brain
35 chr1:179116200-179120200 Weak transcription NHEK skin
36 chr1:179116200-179121000 Weak transcription Primary T helper naive cells fromperipheralblood blood
37 chr1:179116200-179121400 Weak transcription HSMM muscle
38 chr1:179116200-179122600 Weak transcription NHLF lung
39 chr1:179116200-179124000 Weak transcription Osteobl bone
40 chr1:179116200-179124400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr1:179116200-179133000 Weak transcription NHDF-Ad bronchial
42 chr1:179116400-179119600 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
43 chr1:179116400-179121400 Weak transcription Primary T helper cells PMA-I stimulated --
44 chr1:179116400-179121400 Weak transcription Muscle Satellite Cultured Cells --
45 chr1:179116400-179133400 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
46 chr1:179116600-179119200 ZNF genes & repeats Primary hematopoietic stem cells G-CSF-mobilized Male --
47 chr1:179116600-179123400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
48 chr1:179116800-179117800 Strong transcription Thymus Thymus
49 chr1:179116800-179122400 Weak transcription HUVEC blood vessel
50 chr1:179117000-179118400 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain

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Last update: Aug 31, 2015