The 2.0 version of rSNPBase

Variant report

Variant rs9729199
Chromosome Location chr1:179092613-179092614
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:124 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179053200-179096000 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
2 chr1:179059200-179096400 Strong transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
3 chr1:179063200-179112000 Weak transcription Fetal Kidney kidney
4 chr1:179064800-179097800 Weak transcription Primary T killer memory cells from peripheral blood blood
5 chr1:179075400-179096200 Strong transcription Breast Myoepithelial Primary Cells Breast
6 chr1:179076200-179093400 Strong transcription Fetal Stomach stomach
7 chr1:179076600-179092800 Strong transcription NH-A brain
8 chr1:179077600-179094000 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
9 chr1:179078600-179097600 Weak transcription Stomach Mucosa stomach
10 chr1:179079600-179109800 Weak transcription Small Intestine intestine
11 chr1:179080000-179097800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
12 chr1:179080000-179097800 Weak transcription Primary T helper memory cells from peripheral blood 1 blood
13 chr1:179080000-179098600 Weak transcription Esophagus oesophagus
14 chr1:179080200-179095800 Weak transcription Pancreatic Islets Pancreatic Islet
15 chr1:179080200-179101600 Weak transcription Fetal Brain Male brain
16 chr1:179080400-179103800 Weak transcription iPS DF 19.11 Cell Line embryonic stem cell
17 chr1:179080800-179098400 Weak transcription Brain Inferior Temporal Lobe brain
18 chr1:179080800-179099000 Weak transcription Colonic Mucosa Colon
19 chr1:179080800-179099000 Weak transcription Spleen Spleen
20 chr1:179084000-179093200 Strong transcription Fetal Intestine Large intestine
21 chr1:179085200-179094000 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
22 chr1:179085400-179093200 Strong transcription Fetal Muscle Leg muscle
23 chr1:179085400-179095000 Strong transcription Foreskin Fibroblast Primary Cells skin02 Skin
24 chr1:179086400-179095400 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
25 chr1:179086600-179105000 Weak transcription ES-WA7 Cell Line embryonic stem cell
26 chr1:179086800-179099000 Weak transcription Right Ventricle heart
27 chr1:179087800-179094600 Weak transcription Stomach Smooth Muscle stomach
28 chr1:179087800-179097800 Weak transcription Primary T killer naive cells fromperipheralblood blood
29 chr1:179087800-179113000 Weak transcription Placenta Amnion Placenta Amnion
30 chr1:179088000-179096400 Weak transcription Brain Substantia Nigra brain
31 chr1:179088000-179097800 Weak transcription Primary T helper naive cells from peripheral blood blood
32 chr1:179088000-179098400 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
33 chr1:179088000-179098600 Weak transcription Rectal Mucosa Donor 29 rectum
34 chr1:179088000-179099000 Weak transcription Aorta Aorta
35 chr1:179088200-179093800 Weak transcription Primary hematopoietic stem cells blood
36 chr1:179088200-179095400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
37 chr1:179088200-179097800 Weak transcription Primary B cells from cord blood blood
38 chr1:179088200-179098800 Weak transcription Brain Hippocampus Middle brain
39 chr1:179088200-179102400 Weak transcription Brain Germinal Matrix brain
40 chr1:179088400-179095000 Weak transcription H1 Cell Line embryonic stem cell
41 chr1:179088400-179099200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
42 chr1:179088400-179099400 Weak transcription HUES48 Cell Line embryonic stem cell
43 chr1:179088600-179092800 Weak transcription Primary mononuclear cells fromperipheralblood Blood
44 chr1:179088600-179096800 Weak transcription Skeletal Muscle Female skeletal muscle
45 chr1:179088600-179098800 Weak transcription Ovary ovary
46 chr1:179088600-179098800 Weak transcription Rectal Smooth Muscle rectum
47 chr1:179089000-179097800 Weak transcription Primary B cells from peripheral blood blood
48 chr1:179089200-179093800 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
49 chr1:179089200-179095200 Weak transcription Primary T cells fromperipheralblood blood
50 chr1:179089200-179098400 Weak transcription Monocytes-CD14+_RO01746 blood

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Last update: Aug 31, 2015