The 2.0 version of rSNPBase

Variant report

Variant rs2816189
Chromosome Location chr1:179136269-179136270
allele C/G
Outlinks Ensembl   UCSC
Chromatin state (count:49 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179112400-179139000 Weak transcription K562 blood
2 chr1:179117800-179186000 Weak transcription Fetal Stomach stomach
3 chr1:179121800-179138400 Weak transcription Aorta Aorta
4 chr1:179122000-179139000 Weak transcription Sigmoid Colon Sigmoid Colon
5 chr1:179122000-179189400 Weak transcription Primary B cells from cord blood blood
6 chr1:179122400-179153000 Weak transcription Primary T cells from cord blood blood
7 chr1:179122800-179139000 Weak transcription Lung lung
8 chr1:179122800-179141600 Weak transcription Fetal Intestine Large intestine
9 chr1:179124200-179139000 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
10 chr1:179127400-179139200 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
11 chr1:179132600-179139000 Weak transcription Breast Myoepithelial Primary Cells Breast
12 chr1:179134000-179138200 Weak transcription Hela-S3 cervix
13 chr1:179134000-179139000 Weak transcription Brain Dorsolateral Prefrontal Cortex brain
14 chr1:179134000-179146600 Weak transcription HUES64 Cell Line embryonic stem cell
15 chr1:179134000-179169000 Weak transcription Fetal Intestine Small intestine
16 chr1:179134200-179139400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
17 chr1:179134600-179136400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
18 chr1:179134600-179137800 Weak transcription NH-A brain
19 chr1:179134600-179138600 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
20 chr1:179134600-179139200 Weak transcription ES-I3 Cell Line embryonic stem cell
21 chr1:179134600-179139200 Weak transcription Foreskin Melanocyte Primary Cells skin01 Skin
22 chr1:179134600-179139200 Weak transcription HepG2 liver
23 chr1:179134800-179138800 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
24 chr1:179134800-179138800 Weak transcription HMEC breast
25 chr1:179135000-179136400 Weak transcription A549 lung
26 chr1:179135000-179139000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
27 chr1:179135200-179138800 Weak transcription NHEK skin
28 chr1:179135600-179136800 Enhancers Brain Germinal Matrix brain
29 chr1:179135600-179137200 Enhancers Osteobl bone
30 chr1:179135600-179139000 Enhancers Muscle Satellite Cultured Cells --
31 chr1:179135600-179139600 Enhancers HSMM muscle
32 chr1:179135800-179136600 Enhancers Primary B cells from peripheral blood blood
33 chr1:179135800-179136800 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
34 chr1:179136000-179136600 Flanking Active TSS Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
35 chr1:179136000-179136600 Flanking Active TSS Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
36 chr1:179136000-179136600 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
37 chr1:179136000-179136600 Enhancers Foreskin Melanocyte Primary Cells skin03 Skin
38 chr1:179136000-179136800 Enhancers GM12878-XiMat blood
39 chr1:179136200-179136400 Enhancers Duodenum Smooth Muscle Duodenum
40 chr1:179136200-179136600 Flanking Active TSS Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
41 chr1:179136200-179136600 Enhancers Adipose Nuclei Adipose
42 chr1:179136200-179136600 Enhancers Brain Anterior Caudate brain
43 chr1:179136200-179136600 Enhancers Colon Smooth Muscle Colon
44 chr1:179136200-179136600 Enhancers Pancreatic Islets Pancreatic Islet
45 chr1:179136200-179136600 Enhancers HSMMtube muscle
46 chr1:179136200-179136600 Flanking Active TSS NHDF-Ad bronchial
47 chr1:179136200-179136800 Enhancers Fetal Heart heart
48 chr1:179136200-179137000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
49 chr1:179136200-179137000 Enhancers NHLF lung

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Last update: Aug 31, 2015