The 2.0 version of rSNPBase

Variant report

Variant rs3121198
Chromosome Location chr1:179186067-179186068
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:87 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:179122000-179189400 Weak transcription Primary B cells from cord blood blood
2 chr1:179139400-179196800 Weak transcription Pancreas Pancrea
3 chr1:179157400-179197400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
4 chr1:179157400-179197600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
5 chr1:179160200-179186800 Weak transcription Primary hematopoietic stem cells blood
6 chr1:179160800-179188000 Weak transcription Primary T helper cells fromperipheralblood blood
7 chr1:179169000-179197400 Weak transcription NHEK skin
8 chr1:179170200-179197200 Weak transcription Fetal Intestine Large intestine
9 chr1:179171800-179186600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
10 chr1:179172200-179186600 Weak transcription Primary hematopoietic stem cells short term culture blood
11 chr1:179172800-179189800 Weak transcription Primary T cells from cord blood blood
12 chr1:179173000-179187600 Weak transcription Small Intestine intestine
13 chr1:179174800-179186600 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
14 chr1:179175200-179189200 Weak transcription Primary T helper cells PMA-I stimulated --
15 chr1:179176200-179186800 Weak transcription Duodenum Mucosa Duodenum
16 chr1:179176200-179187000 Weak transcription NHDF-Ad bronchial
17 chr1:179176200-179187200 Weak transcription Skeletal Muscle Female skeletal muscle
18 chr1:179176200-179195800 Weak transcription Colon Smooth Muscle Colon
19 chr1:179176200-179195800 Weak transcription Rectal Mucosa Donor 31 rectum
20 chr1:179176200-179196600 Weak transcription Primary T helper naive cells from peripheral blood blood
21 chr1:179176200-179197600 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
22 chr1:179176400-179187800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
23 chr1:179176400-179196200 Weak transcription Duodenum Smooth Muscle Duodenum
24 chr1:179176400-179197000 Weak transcription Fetal Brain Male brain
25 chr1:179176400-179197400 Weak transcription Fetal Lung lung
26 chr1:179176400-179197600 Weak transcription Left Ventricle heart
27 chr1:179176600-179196200 Weak transcription Brain Hippocampus Middle brain
28 chr1:179176800-179189400 Weak transcription Brain Inferior Temporal Lobe brain
29 chr1:179177000-179196000 Weak transcription Fetal Brain Female brain
30 chr1:179177000-179197600 Weak transcription HSMMtube muscle
31 chr1:179177400-179197200 Weak transcription Brain Germinal Matrix brain
32 chr1:179177800-179196600 Weak transcription Pancreatic Islets Pancreatic Islet
33 chr1:179178000-179196000 Weak transcription Aorta Aorta
34 chr1:179178000-179197600 Weak transcription Gastric stomach
35 chr1:179178400-179189400 Weak transcription HepG2 liver
36 chr1:179178400-179189600 Weak transcription Fetal Adrenal Gland Adrenal Gland
37 chr1:179178400-179197600 Weak transcription HUES64 Cell Line embryonic stem cell
38 chr1:179178600-179186200 Weak transcription Foreskin Keratinocyte Primary Cells skin02 Skin
39 chr1:179178600-179187000 Weak transcription Liver Liver
40 chr1:179178600-179187000 Weak transcription HUVEC blood vessel
41 chr1:179178600-179189000 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
42 chr1:179178600-179197600 Weak transcription HUES6 Cell Line embryonic stem cell
43 chr1:179178600-179197600 Weak transcription NH-A brain
44 chr1:179178800-179186200 Weak transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr1:179178800-179197400 Weak transcription ES-I3 Cell Line embryonic stem cell
46 chr1:179179200-179187800 Weak transcription Ovary ovary
47 chr1:179179200-179187800 Weak transcription Psoas Muscle Psoas
48 chr1:179179200-179189800 Weak transcription Primary T helper naive cells fromperipheralblood blood
49 chr1:179179200-179196000 Weak transcription Sigmoid Colon Sigmoid Colon
50 chr1:179179200-179197400 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin

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Last update: Aug 31, 2015