Variant report

Variant	rs10913693
Chromosome Location	chr1:179081958-179081959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10913692	0.83[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12130276	0.93[ASN][1000 genomes]
rs1763022	0.83[EUR][1000 genomes]
rs2171958	0.85[EUR][1000 genomes]
rs2486998	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2487563	0.83[EUR][1000 genomes]
rs2493123	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2636275	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2636277	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2636291	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2791936	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2791945	0.88[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2793790	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2793794	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2793801	0.82[EUR][1000 genomes]
rs2793802	0.83[EUR][1000 genomes]
rs2793813	0.87[EUR][1000 genomes]
rs2816166	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2816168	0.82[EUR][1000 genomes]
rs2816184	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2816191	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs2816201	0.87[EUR][1000 genomes]
rs2816207	0.84[EUR][1000 genomes]
rs2816212	0.80[EUR][1000 genomes]
rs2816218	0.85[EUR][1000 genomes]
rs3829794	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs413613	0.82[EUR][1000 genomes]
rs9286921	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs9425839	0.85[EUR][1000 genomes]
rs9662858	0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9729129	0.82[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1002511	chr1:179077914-179089842	Strong transcription Weak transcription Genic enhancers Enhancers ZNF genes & repeats	Chromatin interactive region miRNA target site	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179053200-179096000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr1:179059200-179096400	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:179059400-179090400	Strong transcription	HUVEC	blood vessel
4	chr1:179061400-179090400	Strong transcription	HSMM	muscle
5	chr1:179062000-179088000	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
6	chr1:179063200-179112000	Weak transcription	Fetal Kidney	kidney
7	chr1:179064800-179097800	Weak transcription	Primary T killer memory cells from peripheral blood	blood
8	chr1:179070400-179087200	Weak transcription	Psoas Muscle	Psoas
9	chr1:179071400-179090400	Strong transcription	NHDF-Ad	bronchial
10	chr1:179072000-179090400	Strong transcription	Osteobl	bone
11	chr1:179072200-179090000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr1:179074200-179088200	Strong transcription	NHEK	skin
13	chr1:179074200-179091000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
14	chr1:179074400-179088200	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:179074600-179083000	Strong transcription	Primary T cells from cord blood	blood
16	chr1:179075200-179091200	Strong transcription	NHLF	lung
17	chr1:179075400-179084200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr1:179075400-179091000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr1:179075400-179091400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
20	chr1:179075400-179096200	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr1:179075600-179082000	Strong transcription	Cortex derived primary cultured neurospheres	brain
22	chr1:179075600-179082200	Strong transcription	Placenta	Placenta
23	chr1:179075600-179082800	Strong transcription	Stomach Smooth Muscle	stomach
24	chr1:179075600-179084000	Strong transcription	Monocytes-CD14+_RO01746	blood
25	chr1:179075600-179089200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr1:179075800-179082400	Strong transcription	Brain Angular Gyrus	brain
27	chr1:179075800-179082400	Strong transcription	Duodenum Smooth Muscle	Duodenum
28	chr1:179075800-179082800	Strong transcription	Fetal Intestine Large	intestine
29	chr1:179075800-179082800	Strong transcription	Rectal Mucosa Donor 29	rectum
30	chr1:179075800-179083600	Strong transcription	Lung	lung
31	chr1:179075800-179084600	Strong transcription	A549	lung
32	chr1:179075800-179089600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
33	chr1:179076000-179082400	Strong transcription	HUES64 Cell Line	embryonic stem cell
34	chr1:179076000-179082600	Strong transcription	Duodenum Mucosa	Duodenum
35	chr1:179076000-179083600	Strong transcription	Fetal Intestine Small	intestine
36	chr1:179076000-179088200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
37	chr1:179076000-179090400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr1:179076200-179082800	Strong transcription	Colon Smooth Muscle	Colon
39	chr1:179076200-179093400	Strong transcription	Fetal Stomach	stomach
40	chr1:179076400-179082400	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
41	chr1:179076400-179083600	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
42	chr1:179076400-179090400	Strong transcription	Primary T helper cells PMA-I stimulated	--
43	chr1:179076400-179090400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
44	chr1:179076600-179082400	Strong transcription	HepG2	liver
45	chr1:179076600-179090000	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr1:179076600-179092800	Strong transcription	NH-A	brain
47	chr1:179076800-179088000	Strong transcription	Primary T helper cells fromperipheralblood	blood
48	chr1:179077000-179083000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr1:179077200-179090600	Strong transcription	Muscle Satellite Cultured Cells	--
50	chr1:179077400-179083600	Strong transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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