Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:179477575..179481033-chr1:179483963..179487085,3	K562	blood:

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10494520	0.88[CHB][hapmap]
rs10798670	0.88[CHB][hapmap]
rs10913733	0.88[CHB][hapmap]
rs12073970	0.94[CHB][hapmap]
rs12097041	0.88[CHB][hapmap]
rs12120123	0.88[CHB][hapmap]
rs12120740	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12130876	0.88[CHB][hapmap]
rs12131473	0.86[CHB][hapmap]
rs12131475	0.88[CHB][hapmap]
rs12134114	0.88[CHB][hapmap]
rs12138436	0.88[CHB][hapmap]
rs12138619	0.88[CHB][hapmap]
rs12405133	0.88[CHB][hapmap]
rs12405321	0.88[CHB][hapmap]
rs12725126	0.88[CHB][hapmap]
rs12740455	0.88[CHB][hapmap]
rs12745772	0.88[CHB][hapmap]
rs12759446	0.92[CHB][hapmap]
rs1329276	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13306731	0.88[CHB][hapmap]
rs13374852	0.88[CHB][hapmap]
rs16854009	0.81[CHB][hapmap]
rs16854229	0.88[CHB][hapmap]
rs4077551	0.88[CHB][hapmap]
rs4077552	0.88[CHB][hapmap]
rs4111170	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4111172	0.82[AFR][1000 genomes];0.99[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4133136	0.87[CHB][hapmap]
rs6669967	0.88[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1820823	chr1:179455645-179479803	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:179478800-179479600	Enhancers	Primary B cells from peripheral blood	blood
2	chr1:179479000-179479200	Flanking Active TSS	GM12878-XiMat	blood

Quick Search: