Variant report

Variant	rs12042790
Chromosome Location	chr1:47860423-47860424
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10789505	0.81[CHB][hapmap];0.90[JPT][hapmap]
rs11579058	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11584578	0.90[ASN][1000 genomes]
rs12024328	0.94[JPT][hapmap];0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2406101	0.82[ASN][1000 genomes]
rs2622927	0.87[CEU][hapmap];0.86[CHB][hapmap];0.95[JPT][hapmap];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2820991	0.86[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2820992	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6588124	0.85[JPT][hapmap]
rs6692691	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv945748	chr1:47858512-47862980	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47847600-47865200	Weak transcription	GM12878-XiMat	blood
2	chr1:47847600-47872800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr1:47856600-47861400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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