Variant report

Variant	rs11579058
Chromosome Location	chr1:47868005-47868006
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10789505	0.94[JPT][hapmap]
rs11584578	0.84[ASN][1000 genomes]
rs12024328	0.94[JPT][hapmap];0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12042790	1.00[CEU][hapmap];0.94[JPT][hapmap];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2070930	0.83[JPT][hapmap]
rs2406101	0.86[ASN][1000 genomes]
rs2622927	0.87[CEU][hapmap];0.96[GIH][hapmap];0.90[JPT][hapmap];0.95[TSI][hapmap];0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2820991	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs2820992	0.87[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6588124	0.90[JPT][hapmap]
rs6692691	0.89[JPT][hapmap]

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47847600-47872800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:47866600-47869200	Enhancers	Fetal Intestine Large	intestine
3	chr1:47866600-47869200	Enhancers	Fetal Intestine Small	intestine
4	chr1:47867400-47868400	Enhancers	Stomach Mucosa	stomach
5	chr1:47868000-47868600	Bivalent Enhancer	Placenta	Placenta

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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