Variant report

Variant	rs2070930
Chromosome Location	chr1:47683464-47683465
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10789505	1.00[CEU][hapmap];0.89[JPT][hapmap]
rs11211478	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11211483	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11578611	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs11584578	0.94[AMR][1000 genomes]
rs11589932	1.00[AMR][1000 genomes]
rs12029934	1.00[AMR][1000 genomes]
rs12032890	0.94[AMR][1000 genomes]
rs12037936	0.94[AMR][1000 genomes]
rs2208773	1.00[AMR][1000 genomes]
rs3737770	1.00[MEX][hapmap];1.00[MKK][hapmap];0.88[AMR][1000 genomes]
rs6588124	1.00[CEU][hapmap];0.84[JPT][hapmap];1.00[AMR][1000 genomes]
rs6682899	1.00[AMR][1000 genomes]
rs6692691	0.94[JPT][hapmap]
rs7527699	0.86[EUR][1000 genomes]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs2070930	LRRC41	cis	lymphoblastoid	seeQTL

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:47674400-47690600	Weak transcription	Gastric	stomach
2	chr1:47679200-47686200	Weak transcription	Left Ventricle	heart
3	chr1:47679200-47687000	Weak transcription	Adipose Nuclei	Adipose
4	chr1:47679200-47689400	Weak transcription	Lung	lung
5	chr1:47679400-47684800	Weak transcription	Spleen	Spleen
6	chr1:47679600-47683600	Genic enhancers	K562	blood
7	chr1:47679600-47689000	Weak transcription	Right Atrium	heart
8	chr1:47680600-47685800	Weak transcription	Primary hematopoietic stem cells	blood
9	chr1:47681200-47684600	Genic enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
10	chr1:47681800-47689600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr1:47682800-47683800	Genic enhancers	HUVEC	blood vessel
12	chr1:47683000-47684000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
13	chr1:47683400-47684600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links