The 2.0 version of rSNPBase

Variant report

Variant rs12043559
Chromosome Location chr1:45500466-45500467
allele A/T
Outlinks Ensembl   UCSC
Chromatin state (count:46 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:45480800-45500600 Weak transcription HepG2 liver
2 chr1:45480800-45501200 Weak transcription Fetal Brain Male brain
3 chr1:45480800-45510400 Weak transcription Colon Smooth Muscle Colon
4 chr1:45481200-45504600 Weak transcription Colonic Mucosa Colon
5 chr1:45481200-45510200 Weak transcription Lung lung
6 chr1:45481200-45525000 Weak transcription Rectal Smooth Muscle rectum
7 chr1:45481200-45527400 Weak transcription Left Ventricle heart
8 chr1:45482000-45523800 Weak transcription Cortex derived primary cultured neurospheres brain
9 chr1:45485800-45501400 Weak transcription Ovary ovary
10 chr1:45491800-45516400 Weak transcription Spleen Spleen
11 chr1:45492000-45507600 Weak transcription Pancreatic Islets Pancreatic Islet
12 chr1:45494600-45504200 Strong transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
13 chr1:45495000-45506800 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr1:45497400-45525400 Weak transcription Gastric stomach
15 chr1:45497800-45501000 Weak transcription Primary T helper cells fromperipheralblood blood
16 chr1:45497800-45501800 Strong transcription Breast Myoepithelial Primary Cells Breast
17 chr1:45498000-45525600 Weak transcription Pancreas Pancrea
18 chr1:45498200-45506800 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
19 chr1:45498600-45502000 Strong transcription Ganglion Eminence derived primary cultured neurospheres brain
20 chr1:45499200-45502000 Strong transcription Brain Anterior Caudate brain
21 chr1:45499200-45502000 Strong transcription Brain Germinal Matrix brain
22 chr1:45499200-45502000 Strong transcription Brain Inferior Temporal Lobe brain
23 chr1:45499200-45502400 Strong transcription Stomach Smooth Muscle stomach
24 chr1:45499200-45516200 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
25 chr1:45499400-45501200 Strong transcription Fetal Intestine Small intestine
26 chr1:45499400-45501400 Weak transcription Skeletal Muscle Female skeletal muscle
27 chr1:45499400-45502000 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
28 chr1:45499400-45502400 Weak transcription Hela-S3 cervix
29 chr1:45499600-45503200 Weak transcription GM12878-XiMat blood
30 chr1:45499800-45501800 Strong transcription Brain Hippocampus Middle brain
31 chr1:45499800-45501800 Strong transcription Brain Substantia Nigra brain
32 chr1:45499800-45502000 Strong transcription Brain Angular Gyrus brain
33 chr1:45499800-45502000 Strong transcription Brain Cingulate Gyrus brain
34 chr1:45499800-45502000 Strong transcription Fetal Adrenal Gland Adrenal Gland
35 chr1:45499800-45502000 Strong transcription Fetal Brain Female brain
36 chr1:45499800-45502000 Strong transcription Rectal Mucosa Donor 29 rectum
37 chr1:45499800-45502600 Strong transcription Fetal Stomach stomach
38 chr1:45500000-45502000 Strong transcription Duodenum Smooth Muscle Duodenum
39 chr1:45500000-45502000 Strong transcription Rectal Mucosa Donor 31 rectum
40 chr1:45500000-45504800 Weak transcription Primary T cells fromperipheralblood blood
41 chr1:45500200-45501000 Weak transcription Aorta Aorta
42 chr1:45500200-45501200 Weak transcription Duodenum Mucosa Duodenum
43 chr1:45500200-45501600 Weak transcription Fetal Intestine Large intestine
44 chr1:45500400-45500800 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
45 chr1:45500400-45505200 Weak transcription Right Ventricle heart
46 chr1:45500400-45516600 Weak transcription Sigmoid Colon Sigmoid Colon

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Last update: Aug 31, 2015