Variant report

Variant	rs12045128
Chromosome Location	chr1:69572549-69572550
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12048298	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17436885	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17436927	0.97[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1796933	0.93[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2089502	0.89[AFR][1000 genomes]
rs2784828	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34915635	0.81[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6424423	0.89[AFR][1000 genomes]
rs6702175	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71651404	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9661920	0.82[AFR][1000 genomes]

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69569800-69575000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:69570000-69575000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr1:69570000-69575000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr1:69570200-69574800	Weak transcription	NHEK	skin
5	chr1:69570200-69575000	Weak transcription	HMEC	breast
6	chr1:69571400-69575800	Weak transcription	Fetal Brain Male	brain
7	chr1:69572000-69572600	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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