Variant report

Variant	rs9661920
Chromosome Location	chr1:69546193-69546194
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12045128	0.82[AFR][1000 genomes]
rs12048298	0.82[AFR][1000 genomes]
rs17436885	0.82[AFR][1000 genomes]
rs17436927	0.85[AFR][1000 genomes]
rs34910592	0.83[EUR][1000 genomes]
rs71651404	0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv508271	chr1:69522722-69547369	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:69535800-69557000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr1:69543600-69553200	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr1:69543800-69547200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
4	chr1:69543800-69547400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr1:69544000-69546400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr1:69544000-69546600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr1:69544000-69546600	Weak transcription	HUES48 Cell Line	embryonic stem cell
8	chr1:69544000-69546600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
9	chr1:69544000-69547200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
10	chr1:69544000-69547400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
11	chr1:69544200-69546800	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr1:69544600-69546400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
13	chr1:69544600-69546800	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr1:69544600-69550800	Weak transcription	H1 Cell Line	embryonic stem cell
15	chr1:69544800-69546800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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