Variant report

Variant	rs120490
Chromosome Location	chr6:133718103-133718104
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs1336533	1.00[YRI][hapmap]
rs159409	0.82[ASN][1000 genomes]
rs159414	0.88[ASN][1000 genomes]
rs159417	1.00[CEU][hapmap];0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs159418	0.95[CEU][hapmap];0.92[EUR][1000 genomes]
rs159423	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs159424	0.91[EUR][1000 genomes]
rs212808	0.96[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs296422	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs296426	0.95[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs296428	0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs296429	0.95[CEU][hapmap];0.83[JPT][hapmap];0.83[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs296430	0.92[CEU][hapmap];0.97[EUR][1000 genomes]

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133709800-133719800	Enhancers	Cortex derived primary cultured neurospheres	brain
2	chr6:133713800-133719200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr6:133715000-133719400	Weak transcription	Hela-S3	cervix
4	chr6:133716000-133728600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr6:133716800-133718600	Enhancers	Skeletal Muscle Male	skeletal muscle
6	chr6:133717000-133718400	Enhancers	HSMM	muscle
7	chr6:133717000-133718600	Enhancers	HSMMtube	muscle
8	chr6:133717200-133718400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr6:133717200-133718400	Enhancers	Muscle Satellite Cultured Cells	--
10	chr6:133717400-133718400	Enhancers	Skeletal Muscle Female	skeletal muscle
11	chr6:133717600-133718600	Enhancers	Fetal Muscle Leg	muscle
12	chr6:133717800-133718200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr6:133717800-133718400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr6:133718000-133718400	Weak transcription	Psoas Muscle	Psoas
15	chr6:133718000-133720600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr6:133718000-133725000	Weak transcription	A549	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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