Variant report

Variant	rs212808
Chromosome Location	chr6:133716421-133716422
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs120490	0.96[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1336533	1.00[YRI][hapmap]
rs159407	0.95[JPT][hapmap]
rs159417	0.95[CEU][hapmap];0.82[JPT][hapmap];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs159418	0.91[CEU][hapmap];0.92[EUR][1000 genomes]
rs159423	0.95[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.83[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs159424	0.90[EUR][1000 genomes]
rs296422	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];1.00[YRI][hapmap];0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs296426	1.00[CEU][hapmap];0.86[CHB][hapmap];0.83[JPT][hapmap];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs296428	0.97[EUR][1000 genomes]
rs296429	1.00[CEU][hapmap];0.97[EUR][1000 genomes]
rs296430	0.96[CEU][hapmap];0.97[EUR][1000 genomes]

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:133684600-133717800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
2	chr6:133709800-133719800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr6:133711200-133717400	Weak transcription	Skeletal Muscle Female	skeletal muscle
4	chr6:133713600-133717800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr6:133713800-133716600	Weak transcription	Fetal Muscle Leg	muscle
6	chr6:133713800-133719200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr6:133714200-133717000	Weak transcription	HSMMtube	muscle
8	chr6:133714400-133717000	Weak transcription	HSMM	muscle
9	chr6:133715000-133719400	Weak transcription	Hela-S3	cervix
10	chr6:133716000-133728600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr6:133716200-133717200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
12	chr6:133716200-133717200	Weak transcription	Muscle Satellite Cultured Cells	--
13	chr6:133716400-133716800	Enhancers	Psoas Muscle	Psoas
14	chr6:133716400-133716800	Weak transcription	Skeletal Muscle Male	skeletal muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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