Variant report

Variant	rs12052861
Chromosome Location	chr2:180344210-180344211
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10183243	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.84[MEX][hapmap];0.91[MKK][hapmap];1.00[TSI][hapmap];0.95[YRI][hapmap];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs10186717	1.00[JPT][hapmap]
rs10210118	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.88[TSI][hapmap];0.86[EUR][1000 genomes]
rs1033267	1.00[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs10803925	0.97[ASN][1000 genomes]
rs12373740	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12373741	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12477315	0.84[AFR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13013122	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.81[AFR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs1517703	1.00[JPT][hapmap]
rs1517704	1.00[JPT][hapmap]
rs2203736	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2222174	1.00[JPT][hapmap]
rs2367643	1.00[JPT][hapmap]
rs2367644	0.91[AFR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4145838	0.85[EUR][1000 genomes]
rs4567894	1.00[JPT][hapmap]
rs4894105	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs4894106	1.00[JPT][hapmap]
rs6705829	0.97[ASN][1000 genomes]
rs6710463	1.00[CEU][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs6713941	1.00[CEU][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6719228	1.00[JPT][hapmap]
rs6724236	1.00[CEU][hapmap];1.00[JPT][hapmap];0.95[YRI][hapmap];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6731124	0.85[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6747231	0.86[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7575586	1.00[JPT][hapmap]
rs7579276	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs7587761	1.00[CEU][hapmap];1.00[JPT][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7594298	1.00[JPT][hapmap]
rs7597936	1.00[CEU][hapmap];1.00[JPT][hapmap];0.85[EUR][1000 genomes]
rs7598160	0.85[EUR][1000 genomes]
rs7604698	1.00[JPT][hapmap]
rs7609354	1.00[CEU][hapmap];0.87[CHD][hapmap];0.85[TSI][hapmap];0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs9288036	1.00[JPT][hapmap]
rs9288037	1.00[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];1.00[JPT][hapmap];0.94[TSI][hapmap];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9288039	1.00[JPT][hapmap]

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12052861	CCDC141	cis	cerebellum	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180309200-180352200	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:180325200-180351400	Weak transcription	Psoas Muscle	Psoas
3	chr2:180332400-180345800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180332800-180352600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr2:180341200-180350600	Strong transcription	Liver	Liver
6	chr2:180344200-180344800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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