Variant report

Variant	rs2203736
Chromosome Location	chr2:180366919-180366920
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 41 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10183243	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10186717	0.81[ASN][1000 genomes]
rs10210118	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs1033267	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10803925	0.87[ASN][1000 genomes]
rs12052861	0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12373740	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12373741	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs12470477	0.83[ASN][1000 genomes]
rs12474239	0.83[ASN][1000 genomes]
rs12477315	0.93[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs13013122	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1517703	0.83[ASN][1000 genomes]
rs1517704	0.81[ASN][1000 genomes]
rs2367644	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs4145838	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4894105	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6705829	0.87[ASN][1000 genomes]
rs6710463	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6713941	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6719228	0.83[ASN][1000 genomes]
rs6724236	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6731124	0.93[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6734195	0.83[ASN][1000 genomes]
rs6746859	0.83[ASN][1000 genomes]
rs6746879	0.83[ASN][1000 genomes]
rs6747231	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7575586	0.85[ASN][1000 genomes]
rs7579276	0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7587761	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7595054	0.84[EUR][1000 genomes]
rs7597936	0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7598160	0.93[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7604698	0.85[ASN][1000 genomes]
rs7609354	0.93[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9288033	0.88[ASN][1000 genomes]
rs9288036	0.88[ASN][1000 genomes]
rs9288037	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9288039	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875468	chr2:180352334-180396869	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv875469	chr2:180354642-180396869	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180350600-180367200	Weak transcription	Liver	Liver
2	chr2:180352800-180378400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr2:180358400-180367800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
4	chr2:180365600-180369400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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