Variant report

Variant	rs9288033
Chromosome Location	chr2:180369915-180369916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10183243	0.88[ASN][1000 genomes]
rs10186717	0.84[ASN][1000 genomes]
rs10210118	0.88[ASN][1000 genomes]
rs1033267	0.85[ASN][1000 genomes]
rs10803925	0.85[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs12373740	0.85[ASN][1000 genomes]
rs12373741	0.85[ASN][1000 genomes]
rs12470477	0.86[ASN][1000 genomes]
rs12474239	0.86[ASN][1000 genomes]
rs12477315	0.85[ASN][1000 genomes]
rs13013122	0.90[ASN][1000 genomes]
rs1517703	0.86[ASN][1000 genomes]
rs1517704	0.84[ASN][1000 genomes]
rs2203736	0.88[ASN][1000 genomes]
rs2367643	0.81[ASN][1000 genomes]
rs2367644	0.85[ASN][1000 genomes]
rs4145838	0.88[ASN][1000 genomes]
rs4894105	0.81[ASN][1000 genomes]
rs6705829	0.83[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs6710463	0.85[ASN][1000 genomes]
rs6713941	0.85[ASN][1000 genomes]
rs6719228	0.86[ASN][1000 genomes]
rs6724236	0.85[ASN][1000 genomes]
rs6731124	0.90[ASN][1000 genomes]
rs6734195	0.86[ASN][1000 genomes]
rs6746859	0.86[ASN][1000 genomes]
rs6746879	0.86[ASN][1000 genomes]
rs6747231	0.90[ASN][1000 genomes]
rs7575586	0.88[ASN][1000 genomes]
rs7579276	0.81[ASN][1000 genomes]
rs7587761	0.93[ASN][1000 genomes]
rs7597936	0.88[ASN][1000 genomes]
rs7604698	0.88[ASN][1000 genomes]
rs7609354	0.85[ASN][1000 genomes]
rs9288036	0.85[ASN][1000 genomes]
rs9288037	0.93[ASN][1000 genomes]
rs9288039	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875468	chr2:180352334-180396869	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv875469	chr2:180354642-180396869	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180352800-180378400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:180368000-180375400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180368200-180375600	Weak transcription	Liver	Liver

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links