Variant report

Variant	rs12470477
Chromosome Location	chr2:180373752-180373753
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 47 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:45)

rs_ID	r²[population]
rs10183243	0.83[ASN][1000 genomes]
rs10186717	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10195725	0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10210118	0.88[ASN][1000 genomes]
rs1033266	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1033267	0.81[ASN][1000 genomes]
rs12373740	0.86[ASN][1000 genomes]
rs12373741	0.86[ASN][1000 genomes]
rs12474239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12477315	0.81[ASN][1000 genomes]
rs13013122	0.86[ASN][1000 genomes]
rs1400821	0.98[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1517703	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1517704	0.87[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1829283	0.91[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2203736	0.83[ASN][1000 genomes]
rs2222174	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2367643	0.82[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2367644	0.81[ASN][1000 genomes]
rs4145838	0.88[ASN][1000 genomes]
rs4567894	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4894105	0.81[ASN][1000 genomes]
rs4894106	0.81[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4894107	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6710463	0.86[ASN][1000 genomes]
rs6713941	0.86[ASN][1000 genomes]
rs6719228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6724236	0.81[ASN][1000 genomes]
rs6731124	0.90[ASN][1000 genomes]
rs6734195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6746859	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6746879	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6747231	0.90[ASN][1000 genomes]
rs6756413	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7575586	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7579276	0.81[ASN][1000 genomes]
rs7587761	0.88[ASN][1000 genomes]
rs7594298	0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7597936	0.88[ASN][1000 genomes]
rs7604698	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7609354	0.86[ASN][1000 genomes]
rs9288033	0.86[ASN][1000 genomes]
rs9288036	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9288037	0.88[ASN][1000 genomes]
rs9288039	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875468	chr2:180352334-180396869	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv875469	chr2:180354642-180396869	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180352800-180378400	Weak transcription	Skeletal Muscle Male	skeletal muscle
2	chr2:180368000-180375400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
3	chr2:180368200-180375600	Weak transcription	Liver	Liver
4	chr2:180370800-180392800	Weak transcription	Psoas Muscle	Psoas

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links