Variant report

Variant	rs4894107
Chromosome Location	chr2:180386502-180386503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10186717	0.87[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10195725	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10210118	0.81[ASN][1000 genomes]
rs1033266	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12373740	0.84[ASN][1000 genomes]
rs12373741	0.84[ASN][1000 genomes]
rs12470477	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12474239	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1400821	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1517703	0.82[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1517704	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1829283	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2222174	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2367643	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4145838	0.81[ASN][1000 genomes]
rs4567894	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4894105	0.88[ASN][1000 genomes]
rs4894106	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6710463	0.88[ASN][1000 genomes]
rs6713941	0.84[ASN][1000 genomes]
rs6719228	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6731124	0.84[ASN][1000 genomes]
rs6734195	0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6746859	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6746879	1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6747231	0.84[ASN][1000 genomes]
rs6756413	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7575586	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7579276	0.88[ASN][1000 genomes]
rs7587761	0.81[ASN][1000 genomes]
rs7594298	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7597936	0.81[ASN][1000 genomes]
rs7604698	0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7609354	0.84[ASN][1000 genomes]
rs9288036	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs9288037	0.81[ASN][1000 genomes]
rs9288039	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875468	chr2:180352334-180396869	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv875469	chr2:180354642-180396869	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180370800-180392800	Weak transcription	Psoas Muscle	Psoas
2	chr2:180379000-180390400	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr2:180383800-180389800	Weak transcription	Ovary	ovary
4	chr2:180384200-180391400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr2:180386400-180386600	Enhancers	ES-I3 Cell Line	embryonic stem cell
6	chr2:180386400-180387200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr2:180386400-180387200	Enhancers	HepG2	liver
8	chr2:180386400-180387600	Enhancers	Liver	Liver

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