Variant report

Variant	rs7595054
Chromosome Location	chr2:180379756-180379757
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10183243	0.83[EUR][1000 genomes]
rs10186717	0.80[ASN][1000 genomes]
rs10210118	0.81[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1033267	0.82[ASN][1000 genomes]
rs12373740	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12373741	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12477315	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs13013122	0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs1517704	0.80[ASN][1000 genomes]
rs2203736	0.84[EUR][1000 genomes]
rs2367644	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4145838	0.85[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4894105	0.88[AFR][1000 genomes];0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6710463	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6713941	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6724236	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6731124	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6747231	0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7579276	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7587761	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7597936	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7598160	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.90[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs7609354	0.88[AFR][1000 genomes];0.82[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs9288037	0.84[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9288039	0.80[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv875468	chr2:180352334-180396869	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv875469	chr2:180354642-180396869	Enhancers Strong transcription Weak transcription Genic enhancers ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:180370800-180392800	Weak transcription	Psoas Muscle	Psoas
2	chr2:180375600-180381400	Strong transcription	Liver	Liver
3	chr2:180378200-180381400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr2:180379000-180390400	Weak transcription	Skeletal Muscle Male	skeletal muscle
5	chr2:180379200-180383000	Weak transcription	Fetal Intestine Small	intestine
6	chr2:180379600-180383600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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