Variant report

Variant	rs12053839
Chromosome Location	chr3:140923354-140923355
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10935421	0.88[AMR][1000 genomes]
rs12486678	0.94[AMR][1000 genomes]
rs12495839	0.94[AMR][1000 genomes]
rs12633778	0.88[AMR][1000 genomes]
rs16851167	0.88[AMR][1000 genomes]
rs1982642	0.94[AMR][1000 genomes]
rs7638594	0.81[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877550	chr3:140867094-140933231	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140923000-140923400	Enhancers	Placenta	Placenta
2	chr3:140923200-140923400	Flanking Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:140923200-140923400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr3:140923200-140924600	Enhancers	K562	blood
5	chr3:140923200-140931200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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