Variant report

Variant	rs16851167
Chromosome Location	chr3:140956621-140956622
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:140948502..140951500-chr3:140954182..140956854,2	MCF-7	breast:
2	chr3:140954329..140957093-chr3:140957221..140960303,3	K562	blood:

Variant related genes	Relation type
ENSG00000155893	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10433434	0.91[EUR][1000 genomes]
rs10935419	0.91[EUR][1000 genomes]
rs10935421	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10935422	0.86[JPT][hapmap]
rs12053839	0.88[AMR][1000 genomes]
rs12486678	0.94[AMR][1000 genomes]
rs12495839	0.94[AMR][1000 genomes]
rs12633778	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1982642	0.94[AMR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv460870	chr3:140938546-141005574	Weak transcription Flanking Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv591892	chr3:140938546-141005574	Weak transcription Enhancers Bivalent Enhancer Active TSS Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:103 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140951600-140957000	Weak transcription	Aorta	Aorta
2	chr3:140951600-140959000	Weak transcription	Placenta Amnion	Placenta Amnion
3	chr3:140951600-140979000	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr3:140951800-140956800	Weak transcription	Right Atrium	heart
5	chr3:140951800-140956800	Weak transcription	Stomach Mucosa	stomach
6	chr3:140951800-140958800	Weak transcription	Osteobl	bone
7	chr3:140951800-140959000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
8	chr3:140951800-140960200	Weak transcription	Esophagus	oesophagus
9	chr3:140951800-140960400	Weak transcription	Brain Substantia Nigra	brain
10	chr3:140951800-140962000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr3:140951800-140962200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:140952000-140956800	Weak transcription	HSMM	muscle
13	chr3:140952000-140957000	Weak transcription	Brain Anterior Caudate	brain
14	chr3:140952000-140958400	Weak transcription	Fetal Kidney	kidney
15	chr3:140952000-140959000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr3:140952000-140959000	Weak transcription	Placenta	Placenta
17	chr3:140952000-140959600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr3:140952000-140962000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr3:140952200-140958000	Weak transcription	Right Ventricle	heart
20	chr3:140952400-140959600	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:140952600-140957800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr3:140953000-140956800	Enhancers	Fetal Heart	heart
23	chr3:140953000-140958800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
24	chr3:140953200-140959200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr3:140953400-140958800	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
26	chr3:140953600-140959600	Genic enhancers	Fetal Thymus	thymus
27	chr3:140953600-140960200	Weak transcription	Spleen	Spleen
28	chr3:140953800-140958400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr3:140954000-140959200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
30	chr3:140954200-140959200	Weak transcription	Primary neutrophils fromperipheralblood	blood
31	chr3:140954400-140956800	Enhancers	Primary T helper cells PMA-I stimulated	--
32	chr3:140954800-140957000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
33	chr3:140954800-140957200	Genic enhancers	iPS-18 Cell Line	embryonic stem cell
34	chr3:140954800-140957200	Enhancers	Primary hematopoietic stem cells	blood
35	chr3:140954800-140958600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
36	chr3:140955000-140956800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
37	chr3:140955000-140956800	Weak transcription	Lung	lung
38	chr3:140955000-140959400	Enhancers	iPS-15b Cell Line	embryonic stem cell
39	chr3:140955000-140959600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr3:140955000-140960200	Weak transcription	Adipose Nuclei	Adipose
41	chr3:140955000-140960600	Weak transcription	Brain Inferior Temporal Lobe	brain
42	chr3:140955000-140961800	Enhancers	Cortex derived primary cultured neurospheres	brain
43	chr3:140955200-140956800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
44	chr3:140955200-140956800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
45	chr3:140955200-140956800	Enhancers	Brain Germinal Matrix	brain
46	chr3:140955200-140956800	Weak transcription	Fetal Stomach	stomach
47	chr3:140955200-140956800	Weak transcription	Stomach Smooth Muscle	stomach
48	chr3:140955200-140958200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
49	chr3:140955200-140958200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
50	chr3:140955200-140959000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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