Variant report

Variant	rs10935419
Chromosome Location	chr3:140906373-140906374
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs10433433	0.91[ASN][1000 genomes]
rs10433434	0.80[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10935421	0.81[EUR][1000 genomes]
rs11918595	0.91[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs11919104	0.87[ASN][1000 genomes]
rs11922680	0.87[ASN][1000 genomes]
rs12633778	0.91[EUR][1000 genomes]
rs12635582	0.91[ASN][1000 genomes]
rs16851167	0.91[EUR][1000 genomes]
rs6802357	1.00[CEU][hapmap]
rs72987316	0.91[AMR][1000 genomes];0.93[ASN][1000 genomes]
rs7638594	1.00[CEU][hapmap]
rs9831004	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877550	chr3:140867094-140933231	Weak transcription Enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Genic enhancers	Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:140905800-140911400	Weak transcription	Thymus	Thymus

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links