Variant report

rSNPs within LD-proxies of this variant (count:20)

rs_ID	r²[population]
rs2352081	0.97[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3934372	0.92[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4345364	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs56351448	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs9293963	1.00[YRI][hapmap];0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9293966	0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9343124	0.91[AFR][1000 genomes];0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9343125	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9343133	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9352101	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9352102	0.80[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9359074	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs9359075	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs9359078	0.82[AFR][1000 genomes];0.92[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9360747	0.81[ASN][1000 genomes]
rs9360758	0.92[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs9360764	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9360765	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.82[ASN][1000 genomes]
rs9360773	0.86[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs9360777	0.80[AMR][1000 genomes];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv886162	chr6:74903797-75006170	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv886163	chr6:74944460-75006170	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
4	nsv886164	chr6:74944460-75024313	Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74959600-74963400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:74960400-74965600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
3	chr6:74961200-74961800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr6:74961200-74962000	Enhancers	Colon Smooth Muscle	Colon
5	chr6:74961200-74962000	Enhancers	Stomach Smooth Muscle	stomach
6	chr6:74961400-74961800	Enhancers	Rectal Smooth Muscle	rectum
7	chr6:74961400-74963200	Weak transcription	NHEK	skin
8	chr6:74961400-74966400	Weak transcription	NHLF	lung
9	chr6:74961600-74962200	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr6:74961600-74966600	Weak transcription	Adipose Nuclei	Adipose

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