Variant report

Variant	rs4345364
Chromosome Location	chr6:74892706-74892707
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs12055781	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12175382	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs2352081	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs3934372	0.88[AMR][1000 genomes]
rs4708133	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs4708135	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56351448	0.88[AMR][1000 genomes]
rs9293963	0.95[CHB][hapmap];0.90[JPT][hapmap];0.88[AMR][1000 genomes]
rs9293966	0.80[AMR][1000 genomes]
rs9343124	0.88[AMR][1000 genomes]
rs9343125	0.84[AMR][1000 genomes]
rs9359074	0.92[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs9359075	0.88[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs9359078	0.84[AMR][1000 genomes]
rs9360745	0.82[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs9360747	0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs9360758	0.88[AMR][1000 genomes]
rs9360764	0.86[AMR][1000 genomes]
rs9360765	0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3394316	chr6:74630005-74935625	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv603733	chr6:74666559-74944460	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	esv3327625	chr6:74716120-74971605	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv1017333	chr6:74776830-74907758	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv538307	chr6:74776830-74907758	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	esv2754326	chr6:74884669-74918170	Enhancers Weak transcription Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:74892400-74893000	Enhancers	Stomach Smooth Muscle	stomach
2	chr6:74892600-74893000	Enhancers	Pancreas	Pancrea
3	chr6:74892600-74893000	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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