Variant report
| Variant | rs12060746 |
|---|---|
| Chromosome Location | chr1:72987229-72987230 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:1)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | lncRNA name | Chromosome Location | lncRNA alias |
|---|---|---|---|
| 1 | lnc-NEGR1-4 | chr1:72987192-72987299 | NONHSAT003911 |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:38)
| rs_ID | r2[population] |
|---|---|
| rs10493503 | 1.00[ASN][1000 genomes] |
| rs1342689 | 1.00[ASN][1000 genomes] |
| rs1361769 | 1.00[ASN][1000 genomes] |
| rs1418624 | 1.00[ASN][1000 genomes] |
| rs1418625 | 1.00[ASN][1000 genomes] |
| rs1418626 | 1.00[ASN][1000 genomes] |
| rs1418627 | 1.00[ASN][1000 genomes] |
| rs1418628 | 1.00[ASN][1000 genomes] |
| rs1418629 | 1.00[ASN][1000 genomes] |
| rs1445586 | 1.00[ASN][1000 genomes] |
| rs1664362 | 1.00[ASN][1000 genomes] |
| rs1664368 | 1.00[ASN][1000 genomes] |
| rs1664371 | 1.00[ASN][1000 genomes] |
| rs1664373 | 1.00[ASN][1000 genomes] |
| rs1664376 | 1.00[ASN][1000 genomes] |
| rs1664397 | 1.00[ASN][1000 genomes] |
| rs17092934 | 1.00[ASN][1000 genomes] |
| rs17092971 | 0.97[ASN][1000 genomes] |
| rs17092982 | 0.97[ASN][1000 genomes] |
| rs17092988 | 0.97[ASN][1000 genomes] |
| rs17092991 | 0.97[ASN][1000 genomes] |
| rs1775377 | 1.00[ASN][1000 genomes] |
| rs1775378 | 1.00[ASN][1000 genomes] |
| rs1775380 | 1.00[ASN][1000 genomes] |
| rs1775381 | 1.00[ASN][1000 genomes] |
| rs1775382 | 1.00[ASN][1000 genomes] |
| rs1775383 | 1.00[ASN][1000 genomes] |
| rs1775384 | 1.00[ASN][1000 genomes] |
| rs1775385 | 1.00[ASN][1000 genomes] |
| rs1822973 | 1.00[ASN][1000 genomes] |
| rs1822976 | 1.00[ASN][1000 genomes] |
| rs2002213 | 1.00[ASN][1000 genomes] |
| rs2590936 | 1.00[ASN][1000 genomes] |
| rs2797096 | 1.00[ASN][1000 genomes] |
| rs2797097 | 1.00[ASN][1000 genomes] |
| rs2797098 | 1.00[ASN][1000 genomes] |
| rs2797099 | 1.00[ASN][1000 genomes] |
| rs782222 | 0.85[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | esv2422432 | chr1:72821856-73148651 | Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer | Chromatin interactive regionlncRNA | 1 gene(s) | inside rSNPs | diseases |
| 2 | nsv870463 | chr1:72861847-72995398 | Enhancers Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 3 | nsv871758 | chr1:72861847-72995398 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 4 | nsv830215 | chr1:72869049-73029787 | Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Strong transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 5 | nsv546563 | chr1:72956037-73041879 | Enhancers Flanking Active TSS Weak transcription Active TSS | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| 6 | nsv871074 | chr1:72987229-73100055 | Flanking Active TSS Enhancers Active TSS Weak transcription | Chromatin interactive regionlncRNA | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:72986800-72988000 | Enhancers | Hela-S3 | cervix |
| 2 | chr1:72987000-72987600 | Enhancers | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
