Variant report

Variant	rs17092988
Chromosome Location	chr1:73036923-73036924
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10493503	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs12060746	0.97[ASN][1000 genomes]
rs1342689	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1361769	0.97[ASN][1000 genomes]
rs1418624	0.97[ASN][1000 genomes]
rs1418625	0.97[ASN][1000 genomes]
rs1418626	0.97[ASN][1000 genomes]
rs1418627	0.97[ASN][1000 genomes]
rs1418628	0.97[ASN][1000 genomes]
rs1418629	0.97[ASN][1000 genomes]
rs1445586	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs1664362	0.97[ASN][1000 genomes]
rs1664368	0.97[ASN][1000 genomes]
rs1664371	0.97[ASN][1000 genomes]
rs1664373	0.97[ASN][1000 genomes]
rs1664376	0.97[ASN][1000 genomes]
rs1664397	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17092934	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs17092971	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17092982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17092991	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1775377	0.97[ASN][1000 genomes]
rs1775378	0.97[ASN][1000 genomes]
rs1775380	0.97[ASN][1000 genomes]
rs1775381	0.97[ASN][1000 genomes]
rs1775382	0.97[ASN][1000 genomes]
rs1775383	0.97[ASN][1000 genomes]
rs1775384	0.97[ASN][1000 genomes]
rs1775385	0.97[ASN][1000 genomes]
rs1822973	0.97[ASN][1000 genomes]
rs1822976	0.90[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2002213	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2590936	0.97[ASN][1000 genomes]
rs2797096	0.97[ASN][1000 genomes]
rs2797097	0.97[ASN][1000 genomes]
rs2797098	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs2797099	0.83[AMR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:19 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2422432	chr1:72821856-73148651	Flanking Active TSS Enhancers Weak transcription Active TSS ZNF genes & repeats Genic enhancers Strong transcription Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv546563	chr1:72956037-73041879	Enhancers Flanking Active TSS Weak transcription Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv871074	chr1:72987229-73100055	Flanking Active TSS Enhancers Active TSS Weak transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv1005157	chr1:73007962-73088158	Enhancers Weak transcription Active TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	nsv1000359	chr1:73008167-73088158	Enhancers Active TSS Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv546564	chr1:73010123-73101763	Enhancers Active TSS Flanking Active TSS Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv1000283	chr1:73011908-73088158	Weak transcription Enhancers Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
8	nsv432157	chr1:73012179-73088158	Weak transcription Enhancers Active TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
9	esv2750838	chr1:73012179-73088179	Enhancers Weak transcription Active TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
10	esv2750839	chr1:73012179-73088179	Flanking Active TSS Weak transcription Enhancers Active TSS	lncRNA	n/a	inside rSNPs	diseases
11	nsv432046	chr1:73012179-73088179	Enhancers Weak transcription Active TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
12	nsv1011385	chr1:73012228-73088158	Enhancers Active TSS Flanking Active TSS Weak transcription	lncRNA	n/a	inside rSNPs	diseases
13	nsv432268	chr1:73012228-73088158	Enhancers Weak transcription Active TSS Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
14	nsv997766	chr1:73012604-73088158	Enhancers Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
15	nsv1001781	chr1:73012777-73088158	Enhancers Weak transcription Flanking Active TSS Active TSS	lncRNA	n/a	inside rSNPs	diseases
16	nsv1007535	chr1:73014642-73088158	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	diseases
17	nsv546565	chr1:73015588-73090608	Active TSS Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
18	nsv428101	chr1:73017520-73211351	Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
19	nsv516582	chr1:73021243-73084221	Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:73036000-73037800	Enhancers	Fetal Heart	heart
2	chr1:73036200-73037000	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr1:73036400-73037000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
4	chr1:73036400-73037200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr1:73036400-73037200	Enhancers	iPS-15b Cell Line	embryonic stem cell
6	chr1:73036600-73037000	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr1:73036600-73037200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links