Variant report

Variant	rs12061971
Chromosome Location	chr1:103299315-103299316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11164624	0.80[AFR][1000 genomes]
rs11164631	1.00[AMR][1000 genomes]
rs12068229	1.00[AMR][1000 genomes]
rs12068896	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12069770	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12085950	1.00[AMR][1000 genomes]
rs12092904	1.00[AMR][1000 genomes]
rs1463041	1.00[AMR][1000 genomes]
rs1463046	1.00[AMR][1000 genomes]
rs17127195	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7545600	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103299000-103299800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr1:103299200-103299400	Enhancers	Hela-S3	cervix
3	chr1:103299200-103299600	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr1:103299200-103300200	Enhancers	Placenta Amnion	Placenta Amnion

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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