Variant report

Variant	rs12068896
Chromosome Location	chr1:103328935-103328936
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs11164624	0.90[AFR][1000 genomes]
rs11164631	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12060690	0.86[AFR][1000 genomes]
rs12061875	0.86[AFR][1000 genomes]
rs12061971	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12068229	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12069770	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12085950	1.00[AMR][1000 genomes]
rs12092904	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1463041	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs1463046	1.00[AMR][1000 genomes]
rs17127195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7545600	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830882	chr1:103192683-103355802	Weak transcription Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
2	nsv522922	chr1:103305021-103764640	Enhancers Strong transcription Flanking Active TSS Weak transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:103324800-103334200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr1:103328400-103329800	Enhancers	Cortex derived primary cultured neurospheres	brain
3	chr1:103328600-103329000	Weak transcription	HUES64 Cell Line	embryonic stem cell
4	chr1:103328600-103329800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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