Variant report

Variant	rs12062222
Chromosome Location	chr1:97331544-97331545
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12077060	0.84[EUR][1000 genomes]
rs12082277	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1519891	0.84[EUR][1000 genomes]
rs17115879	0.84[EUR][1000 genomes]
rs28819508	0.84[EUR][1000 genomes]
rs6660077	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs6673719	0.84[EUR][1000 genomes]
rs6697652	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv830681	chr1:97165786-97338064	Strong transcription Enhancers Weak transcription ZNF genes & repeats Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv491816	chr1:97266403-98223619	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
3	nsv1966	chr1:97287841-97332500	Enhancers Weak transcription Strong transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:97330200-97332400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
2	chr1:97330800-97332000	Enhancers	HUVEC	blood vessel
3	chr1:97330800-97332200	Enhancers	Hela-S3	cervix
4	chr1:97331000-97331600	Enhancers	HSMM	muscle
5	chr1:97331000-97332000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr1:97331000-97332200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr1:97331000-97332200	Enhancers	Colon Smooth Muscle	Colon
8	chr1:97331000-97332200	Enhancers	Fetal Lung	lung
9	chr1:97331000-97332200	Enhancers	Rectal Smooth Muscle	rectum
10	chr1:97331000-97332200	Enhancers	Osteobl	bone
11	chr1:97331000-97332600	Enhancers	Muscle Satellite Cultured Cells	--
12	chr1:97331200-97331600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
13	chr1:97331200-97331600	Weak transcription	NHLF	lung
14	chr1:97331200-97332000	Enhancers	HMEC	breast
15	chr1:97331200-97332000	Enhancers	NH-A	brain
16	chr1:97331400-97331800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
17	chr1:97331400-97331800	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr1:97331400-97332600	Enhancers	NHDF-Ad	bronchial

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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