Variant report

Variant	rs12077060
Chromosome Location	chr1:97453507-97453508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11165750	0.83[AFR][1000 genomes]
rs11165752	0.83[AFR][1000 genomes]
rs12062222	0.84[EUR][1000 genomes]
rs12081936	0.87[AFR][1000 genomes]
rs12081979	0.87[AFR][1000 genomes]
rs12082277	0.84[EUR][1000 genomes]
rs12143545	1.00[ASN][1000 genomes]
rs1489806	1.00[ASN][1000 genomes]
rs1709411	1.00[ASN][1000 genomes]
rs2004950	0.82[EUR][1000 genomes]
rs273881	1.00[ASN][1000 genomes]
rs6660077	0.84[EUR][1000 genomes]
rs6697652	1.00[EUR][1000 genomes]
rs9651214	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491816	chr1:97266403-98223619	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:97448200-97457200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
2	chr1:97452200-97453600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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