Variant report
| Variant | rs12081979 |
|---|---|
| Chromosome Location | chr1:97451793-97451794 |
| allele | A/T |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000265771 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs11165735 | 1.00[EUR][1000 genomes] |
| rs11165736 | 0.88[YRI][hapmap];0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11165739 | 1.00[EUR][1000 genomes] |
| rs11165747 | 0.85[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11165748 | 1.00[EUR][1000 genomes] |
| rs11165749 | 0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11165750 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11165752 | 0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12061423 | 0.84[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12065968 | 1.00[EUR][1000 genomes] |
| rs12066761 | 1.00[EUR][1000 genomes] |
| rs12070230 | 1.00[EUR][1000 genomes] |
| rs12071395 | 1.00[EUR][1000 genomes] |
| rs12075543 | 1.00[EUR][1000 genomes] |
| rs12077060 | 0.87[AFR][1000 genomes] |
| rs12081695 | 1.00[YRI][hapmap] |
| rs12081936 | 1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12083045 | 1.00[EUR][1000 genomes] |
| rs12084508 | 1.00[EUR][1000 genomes] |
| rs12087038 | 1.00[EUR][1000 genomes] |
| rs12087881 | 1.00[EUR][1000 genomes] |
| rs12088005 | 1.00[EUR][1000 genomes] |
| rs12088015 | 1.00[EUR][1000 genomes] |
| rs12090340 | 1.00[EUR][1000 genomes] |
| rs12090892 | 1.00[EUR][1000 genomes] |
| rs12091668 | 0.82[AFR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12095003 | 1.00[EUR][1000 genomes] |
| rs1489807 | 1.00[EUR][1000 genomes] |
| rs56767532 | 1.00[EUR][1000 genomes] |
| rs57248521 | 1.00[EUR][1000 genomes] |
| rs58442776 | 1.00[EUR][1000 genomes] |
| rs6701933 | 1.00[EUR][1000 genomes] |
| rs7523315 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv491816 | chr1:97266403-98223619 | Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:97439800-97451800 | Weak transcription | Fetal Heart | heart |
| 2 | chr1:97447400-97452000 | Weak transcription | Breast variant Human Mammary Epithelial Cells (vHMEC) | Breast |
| 3 | chr1:97448200-97457200 | Weak transcription | hESC Derived CD184+ Endoderm Cultured Cells | ES cell derived |
