Variant report

Variant	rs11165750
Chromosome Location	chr1:97444372-97444373
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11165735	1.00[EUR][1000 genomes]
rs11165736	0.94[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11165739	1.00[EUR][1000 genomes]
rs11165747	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11165748	1.00[EUR][1000 genomes]
rs11165749	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165752	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12061423	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12065968	1.00[EUR][1000 genomes]
rs12066761	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12070230	1.00[EUR][1000 genomes]
rs12071395	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12075543	1.00[EUR][1000 genomes]
rs12077060	0.83[AFR][1000 genomes]
rs12081695	0.93[YRI][hapmap]
rs12081936	0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12081979	0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12083045	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12084508	1.00[EUR][1000 genomes]
rs12087038	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12087881	1.00[EUR][1000 genomes]
rs12088005	1.00[EUR][1000 genomes]
rs12088015	1.00[EUR][1000 genomes]
rs12090340	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12090892	1.00[EUR][1000 genomes]
rs12091668	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12095003	1.00[EUR][1000 genomes]
rs1489807	1.00[EUR][1000 genomes]
rs56767532	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57248521	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58442776	1.00[EUR][1000 genomes]
rs6701933	1.00[EUR][1000 genomes]
rs7523315	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491816	chr1:97266403-98223619	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv522619	chr1:97440897-97447183	Enhancers Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:97439400-97444600	Weak transcription	Fetal Muscle Leg	muscle
2	chr1:97439800-97451800	Weak transcription	Fetal Heart	heart
3	chr1:97443800-97445200	Enhancers	HUES48 Cell Line	embryonic stem cell
4	chr1:97444000-97444800	Enhancers	H9 Cell Line	embryonic stem cell
5	chr1:97444000-97445400	Enhancers	H1 Cell Line	embryonic stem cell
6	chr1:97444200-97444600	Enhancers	iPS-15b Cell Line	embryonic stem cell
7	chr1:97444200-97444800	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr1:97444200-97444800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:97444200-97446000	Enhancers	Fetal Stomach	stomach
10	chr1:97444200-97446600	Enhancers	Fetal Lung	lung

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