Variant report

Variant	rs11165752
Chromosome Location	chr1:97449255-97449256
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11165735	1.00[EUR][1000 genomes]
rs11165736	0.94[YRI][hapmap];0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11165739	1.00[EUR][1000 genomes]
rs11165747	0.89[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs11165748	1.00[EUR][1000 genomes]
rs11165749	0.94[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11165750	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12061423	0.88[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12065968	1.00[EUR][1000 genomes]
rs12066761	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12070230	1.00[EUR][1000 genomes]
rs12071395	0.80[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12075543	1.00[EUR][1000 genomes]
rs12077060	0.83[AFR][1000 genomes]
rs12081695	0.93[YRI][hapmap]
rs12081936	0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12081979	0.94[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12083045	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12084508	1.00[EUR][1000 genomes]
rs12087038	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12087881	1.00[EUR][1000 genomes]
rs12088005	1.00[EUR][1000 genomes]
rs12088015	1.00[EUR][1000 genomes]
rs12090340	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12090892	1.00[EUR][1000 genomes]
rs12091668	0.86[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs12095003	1.00[EUR][1000 genomes]
rs1489807	1.00[EUR][1000 genomes]
rs56767532	0.82[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs57248521	0.83[AFR][1000 genomes];1.00[EUR][1000 genomes]
rs58442776	1.00[EUR][1000 genomes]
rs6701933	1.00[EUR][1000 genomes]
rs7523315	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv491816	chr1:97266403-98223619	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:97439800-97451800	Weak transcription	Fetal Heart	heart
2	chr1:97445400-97450600	Weak transcription	Pancreatic Islets	Pancreatic Islet
3	chr1:97447400-97452000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr1:97448200-97457200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr1:97448800-97449800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
6	chr1:97449200-97449800	Enhancers	HUVEC	blood vessel

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