Variant report
| Variant | rs12087881 |
|---|---|
| Chromosome Location | chr1:97440897-97440898 |
| allele | A/C |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:2)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:2 , 50 per page) page:
1
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:33)
| rs_ID | r2[population] |
|---|---|
| rs11165735 | 1.00[EUR][1000 genomes] |
| rs11165736 | 1.00[EUR][1000 genomes] |
| rs11165739 | 0.87[AFR][1000 genomes];0.82[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs11165747 | 1.00[EUR][1000 genomes] |
| rs11165748 | 1.00[EUR][1000 genomes] |
| rs11165749 | 1.00[EUR][1000 genomes] |
| rs11165750 | 1.00[EUR][1000 genomes] |
| rs11165752 | 1.00[EUR][1000 genomes] |
| rs12061423 | 1.00[EUR][1000 genomes] |
| rs12065968 | 1.00[EUR][1000 genomes] |
| rs12066761 | 1.00[EUR][1000 genomes] |
| rs12070230 | 1.00[EUR][1000 genomes] |
| rs12071395 | 1.00[EUR][1000 genomes] |
| rs12075543 | 1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs12081936 | 1.00[EUR][1000 genomes] |
| rs12081979 | 1.00[EUR][1000 genomes] |
| rs12083045 | 1.00[EUR][1000 genomes] |
| rs12084508 | 1.00[EUR][1000 genomes] |
| rs12087038 | 1.00[EUR][1000 genomes] |
| rs12088005 | 1.00[EUR][1000 genomes] |
| rs12088015 | 1.00[EUR][1000 genomes] |
| rs12090340 | 1.00[EUR][1000 genomes] |
| rs12090892 | 1.00[EUR][1000 genomes] |
| rs12091668 | 1.00[EUR][1000 genomes] |
| rs12095003 | 1.00[EUR][1000 genomes] |
| rs1489807 | 1.00[EUR][1000 genomes] |
| rs1489809 | 0.96[YRI][hapmap] |
| rs17116465 | 1.00[MEX][hapmap] |
| rs56767532 | 1.00[EUR][1000 genomes] |
| rs57248521 | 1.00[EUR][1000 genomes] |
| rs58442776 | 1.00[EUR][1000 genomes] |
| rs6701933 | 1.00[EUR][1000 genomes] |
| rs7523315 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv491816 | chr1:97266403-98223619 | Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNAmiRNA target site | 9 gene(s) | inside rSNPs | diseases |
| 2 | nsv522619 | chr1:97440897-97447183 | Enhancers Weak transcription | Chromatin interactive region | n/a | inside rSNPs | diseases |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr1:97439400-97444600 | Weak transcription | Fetal Muscle Leg | muscle |
| 2 | chr1:97439600-97444200 | Weak transcription | Fetal Stomach | stomach |
| 3 | chr1:97439800-97451800 | Weak transcription | Fetal Heart | heart |
