Variant report

Variant	rs12062332
Chromosome Location	chr1:168426305-168426306
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10918893	0.83[ASN][1000 genomes]
rs12563551	0.83[ASN][1000 genomes]
rs41489748	0.83[ASN][1000 genomes]
rs74120912	0.83[ASN][1000 genomes]
rs74120913	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2500882	chr1:168426298-168429687	Enhancers Active TSS Weak transcription Flanking Active TSS	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:168423000-168426600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr1:168423000-168426600	Enhancers	HMEC	breast
3	chr1:168423000-168430600	Weak transcription	Liver	Liver
4	chr1:168423400-168426400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr1:168423400-168427200	Enhancers	NHEK	skin
6	chr1:168424800-168426400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr1:168425200-168426600	Enhancers	Placenta Amnion	Placenta Amnion
8	chr1:168426000-168435200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links