Variant report

Variant	rs12065477
Chromosome Location	chr1:119642979-119642980
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10923778	1.00[AMR][1000 genomes]
rs12058436	1.00[AMR][1000 genomes]
rs17022673	1.00[AMR][1000 genomes]
rs57903762	1.00[AMR][1000 genomes]
rs59734934	1.00[AMR][1000 genomes]
rs7551265	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3494191	chr1:118772550-119719548	Enhancers Strong transcription Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	esv3494192	chr1:118772550-119719548	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	nsv932014	chr1:119476480-120471049	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	86 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:119634400-119651800	Weak transcription	Aorta	Aorta
2	chr1:119636800-119643400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr1:119636800-119645800	Weak transcription	Left Ventricle	heart
4	chr1:119636800-119659600	Weak transcription	Psoas Muscle	Psoas
5	chr1:119640400-119643000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
6	chr1:119640600-119643400	Weak transcription	HMEC	breast
7	chr1:119640600-119643600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr1:119640600-119643600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
9	chr1:119641600-119646000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr1:119641800-119643200	Enhancers	HSMMtube	muscle
11	chr1:119641800-119644800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr1:119641800-119645200	Enhancers	Muscle Satellite Cultured Cells	--
13	chr1:119641800-119645600	Enhancers	HSMM	muscle
14	chr1:119642400-119645000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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