Variant report

Variant	rs57903762
Chromosome Location	chr1:119824546-119824547
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:119823428..119827293-chr1:119828296..119831084,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10923778	1.00[AMR][1000 genomes]
rs12058436	1.00[AMR][1000 genomes]
rs12065477	1.00[AMR][1000 genomes]
rs58854146	1.00[AMR][1000 genomes]
rs72991462	1.00[AMR][1000 genomes]
rs72992926	1.00[AMR][1000 genomes]
rs72992927	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv932014	chr1:119476480-120471049	Weak transcription Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	86 gene(s)	inside rSNPs	diseases
2	nsv831192	chr1:119671172-119843226	Weak transcription Strong transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	36 gene(s)	inside rSNPs	diseases
3	nsv917091	chr1:119688975-120023222	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
4	esv34089	chr1:119752112-120072961	Enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:119819200-119835200	Weak transcription	Liver	Liver
2	chr1:119822800-119828400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr1:119823000-119828000	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr1:119823000-119840600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr1:119823200-119827400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr1:119823200-119827600	Weak transcription	Muscle Satellite Cultured Cells	--
7	chr1:119823200-119827600	Weak transcription	Osteobl	bone
8	chr1:119823200-119827800	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
9	chr1:119823200-119828000	Weak transcription	HSMMtube	muscle
10	chr1:119823200-119828000	Weak transcription	NHLF	lung
11	chr1:119823400-119827200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr1:119823400-119827400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
13	chr1:119823400-119827400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr1:119823400-119827600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr1:119823400-119827800	Weak transcription	HSMM	muscle
16	chr1:119823400-119828000	Weak transcription	Adipose Nuclei	Adipose
17	chr1:119823400-119828000	Weak transcription	NH-A	brain
18	chr1:119823400-119833000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr1:119823600-119827600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
20	chr1:119823600-119827800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
21	chr1:119823800-119827400	Weak transcription	HMEC	breast
22	chr1:119824000-119827200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr1:119824000-119827600	Weak transcription	NHEK	skin
24	chr1:119824200-119827600	Weak transcription	NHDF-Ad	bronchial

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