Variant report

Variant	rs12069886
Chromosome Location	chr1:150027294-150027295
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11205320	0.81[AFR][1000 genomes]
rs12058672	0.89[AFR][1000 genomes]
rs12059874	0.91[AFR][1000 genomes]
rs12061565	0.94[AFR][1000 genomes]
rs12063329	0.89[AFR][1000 genomes]
rs12072364	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12074281	0.98[AFR][1000 genomes]
rs7540847	0.98[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases
2	nsv529719	chr1:150006344-150311095	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	100 gene(s)	inside rSNPs	diseases
3	nsv947321	chr1:150007387-150030042	Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:15 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149996600-150037000	Weak transcription	Left Ventricle	heart
2	chr1:150017600-150037600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr1:150018000-150031600	Weak transcription	Stomach Smooth Muscle	stomach
4	chr1:150018000-150033400	Weak transcription	Fetal Stomach	stomach
5	chr1:150018200-150038600	Weak transcription	Fetal Muscle Trunk	muscle
6	chr1:150022800-150032400	Weak transcription	Fetal Intestine Small	intestine
7	chr1:150022800-150037200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr1:150022800-150038600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr1:150023000-150028600	Weak transcription	Primary B cells from cord blood	blood
10	chr1:150023000-150033600	Weak transcription	Colon Smooth Muscle	Colon
11	chr1:150026400-150033600	Weak transcription	NHDF-Ad	bronchial
12	chr1:150026400-150033800	Weak transcription	Right Atrium	heart
13	chr1:150026600-150029600	Enhancers	Primary neutrophils fromperipheralblood	blood
14	chr1:150027000-150028200	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr1:150027200-150027800	Weak transcription	Primary monocytes fromperipheralblood	blood

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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