Variant report

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr1:150001605..150003568-chr1:150005160..150008934,3	K562	blood:
2	chr1:149993032..149997672-chr1:150001811..150004898,5	K562	blood:
3	chr1:149996021..149997828-chr1:150000191..150002911,2	K562	blood:
4	chr1:149982534..149985249-chr1:150000444..150003227,2	MCF-7	breast:
5	chr1:149997237..149999198-chr1:150001935..150003672,2	MCF-7	breast:
6	chr1:149982099..149984155-chr1:150000298..150002375,2	K562	blood:
7	chr1:150000977..150003866-chr1:150038010..150039668,2	MCF-7	breast:
8	chr1:149909776..149912433-chr1:150001738..150003437,2	MCF-7	breast:
9	chr1:149970241..149972986-chr1:150000025..150002958,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-VPS45-6	chr1:150001446-150003978	NONHSAT006264

No data

Variant related genes	Relation type
ENSG00000136631	Chromatin interaction
ENSG00000163113	Chromatin interaction

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs11205320	1.00[AMR][1000 genomes]
rs12058672	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs12061565	0.94[AFR][1000 genomes]
rs12063329	1.00[ASW][hapmap];1.00[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.98[AFR][1000 genomes]
rs12069886	0.91[AFR][1000 genomes]
rs12072364	1.00[ASW][hapmap];0.82[LWK][hapmap];0.88[MKK][hapmap];1.00[YRI][hapmap]
rs12074281	0.89[AFR][1000 genomes]
rs16832989	1.00[MEX][hapmap]
rs16832993	1.00[MEX][hapmap]
rs16833048	1.00[MEX][hapmap]
rs16837054	1.00[MEX][hapmap]
rs16837367	1.00[MEX][hapmap]
rs16837593	1.00[MEX][hapmap]
rs16838449	1.00[MEX][hapmap]
rs16841623	1.00[MEX][hapmap]
rs16841697	1.00[MEX][hapmap]
rs6694482	1.00[MEX][hapmap]
rs7523560	1.00[MEX][hapmap]
rs7540847	0.89[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831537	chr1:149833357-150064655	Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	431 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs12059874	FAM78B	trans	lymphoblastoid	seeQTL
rs12059874	ENSA	cis	lymphoblastoid	seeQTL

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:149985600-150022000	Weak transcription	Brain Substantia Nigra	brain
2	chr1:149993800-150005400	Weak transcription	Fetal Heart	heart
3	chr1:149996600-150037000	Weak transcription	Left Ventricle	heart
4	chr1:150001800-150002600	Weak transcription	Stomach Mucosa	stomach

Quick Search: