The 2.0 version of rSNPBase

Variant report

Variant rs16832993
Chromosome Location chr1:149968166-149968167
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:102 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:149948200-149973000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
2 chr1:149948200-149977400 Weak transcription Fetal Muscle Trunk muscle
3 chr1:149948200-149981000 Weak transcription Primary T cells fromperipheralblood blood
4 chr1:149948400-149969400 Weak transcription Primary T helper cells fromperipheralblood blood
5 chr1:149948400-149971600 Weak transcription Fetal Brain Male brain
6 chr1:149948400-149981400 Weak transcription Esophagus oesophagus
7 chr1:149949400-149975400 Weak transcription Placenta Placenta
8 chr1:149949600-149968200 Weak transcription Rectal Mucosa Donor 31 rectum
9 chr1:149949600-149968400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
10 chr1:149949600-149968600 Weak transcription K562 blood
11 chr1:149949600-149974400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
12 chr1:149952200-149980800 Weak transcription Primary T regulatory cells fromperipheralblood blood
13 chr1:149953000-149969400 Weak transcription Duodenum Mucosa Duodenum
14 chr1:149953000-149978800 Weak transcription Pancreas Pancrea
15 chr1:149956600-149968800 Weak transcription Fetal Muscle Leg muscle
16 chr1:149957800-149978600 Weak transcription Spleen Spleen
17 chr1:149958200-149972000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
18 chr1:149958800-149968600 Weak transcription Stomach Smooth Muscle stomach
19 chr1:149958800-149973400 Weak transcription Aorta Aorta
20 chr1:149959400-149968200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
21 chr1:149959400-149975800 Weak transcription Fetal Kidney kidney
22 chr1:149959600-149975400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
23 chr1:149960000-149975400 Weak transcription Hela-S3 cervix
24 chr1:149960800-149969400 Weak transcription Liver Liver
25 chr1:149961000-149968600 Weak transcription Fetal Lung lung
26 chr1:149963800-149968600 Weak transcription Rectal Smooth Muscle rectum
27 chr1:149964600-149972000 Enhancers Brain Hippocampus Middle brain
28 chr1:149965000-149968600 Enhancers Brain Cingulate Gyrus brain
29 chr1:149965000-149972400 Enhancers Brain Angular Gyrus brain
30 chr1:149965000-149978400 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
31 chr1:149965000-149981400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
32 chr1:149965200-149969000 Enhancers Breast Myoepithelial Primary Cells Breast
33 chr1:149965200-149972200 Weak transcription Fetal Intestine Small intestine
34 chr1:149965200-149976000 Weak transcription Lung lung
35 chr1:149965400-149969000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
36 chr1:149965400-149971400 Weak transcription Fetal Stomach stomach
37 chr1:149965400-149975600 Weak transcription Sigmoid Colon Sigmoid Colon
38 chr1:149965600-149968800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
39 chr1:149966200-149973200 Weak transcription Cortex derived primary cultured neurospheres brain
40 chr1:149966200-149974400 Weak transcription Brain Germinal Matrix brain
41 chr1:149966400-149971800 Enhancers Skeletal Muscle Male skeletal muscle
42 chr1:149966800-149970000 Enhancers Foreskin Keratinocyte Primary Cells skin03 Skin
43 chr1:149967000-149969200 Enhancers HUES64 Cell Line embryonic stem cell
44 chr1:149967000-149969600 Enhancers HMEC breast
45 chr1:149967000-149971600 Enhancers Colon Smooth Muscle Colon
46 chr1:149967000-149971800 Enhancers Skeletal Muscle Female skeletal muscle
47 chr1:149967000-149972000 Enhancers Brain Substantia Nigra brain
48 chr1:149967200-149968400 Enhancers Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
49 chr1:149967200-149968400 Enhancers Right Ventricle heart
50 chr1:149967200-149969000 Enhancers Brain Dorsolateral Prefrontal Cortex brain

Quick Search:


  
Input of quick search could be:

what's new

Quick links

Copyright © 2015, Bioinformatics Lab, Institute of Psychology, Chinese Academy of Sciences. All Rights Reserved Feedback
Last update: Aug 31, 2015