The 2.0 version of rSNPBase

Variant report

Variant rs56929499
Chromosome Location chr1:149916185-149916186
allele A/C
Outlinks Ensembl   UCSC
Chromatin state (count:111 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:149909200-149916400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
2 chr1:149909400-149947000 Weak transcription Fetal Brain Male brain
3 chr1:149909600-149916400 Weak transcription Primary T regulatory cells fromperipheralblood blood
4 chr1:149909800-149916600 Weak transcription Primary T helper naive cells fromperipheralblood blood
5 chr1:149910000-149934200 Weak transcription Primary T cells from cord blood blood
6 chr1:149910200-149929800 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr1:149911400-149916200 Weak transcription iPS DF 6.9 Cell Line embryonic stem cell
8 chr1:149911400-149916200 Weak transcription Primary mononuclear cells fromperipheralblood Blood
9 chr1:149911400-149917200 Weak transcription Primary T cells effector/memory enriched fromperipheralblood blood
10 chr1:149911400-149933800 Weak transcription Primary T helper memory cells from peripheral blood 2 blood
11 chr1:149911600-149916600 Weak transcription HSMM muscle
12 chr1:149911800-149916200 Weak transcription Primary T helper cells PMA-I stimulated --
13 chr1:149911800-149916400 Weak transcription NH-A brain
14 chr1:149912000-149916800 Weak transcription HUVEC blood vessel
15 chr1:149912200-149916200 Weak transcription HMEC breast
16 chr1:149912200-149920400 Weak transcription NHDF-Ad bronchial
17 chr1:149912200-149920600 Weak transcription Small Intestine intestine
18 chr1:149912600-149941600 Weak transcription Pancreatic Islets Pancreatic Islet
19 chr1:149912800-149916400 Weak transcription Hela-S3 cervix
20 chr1:149912800-149920600 Weak transcription K562 blood
21 chr1:149912800-149933800 Weak transcription Stomach Mucosa stomach
22 chr1:149914200-149916200 Weak transcription Fetal Lung lung
23 chr1:149914200-149916600 Weak transcription HepG2 liver
24 chr1:149914200-149917000 Weak transcription Fetal Kidney kidney
25 chr1:149914200-149919000 Weak transcription A549 lung
26 chr1:149914200-149919200 Weak transcription ES-I3 Cell Line embryonic stem cell
27 chr1:149914400-149937400 Weak transcription Fetal Heart heart
28 chr1:149914600-149916200 Weak transcription NHEK skin
29 chr1:149914600-149917000 Weak transcription Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
30 chr1:149914800-149916200 Weak transcription hESC Derived CD56+ Ectoderm Cultured Cells ES cell derived
31 chr1:149914800-149919400 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
32 chr1:149914800-149922200 Strong transcription Fetal Stomach stomach
33 chr1:149914800-149922400 Strong transcription IMR90 fetal lung fibroblasts Cell Line lung
34 chr1:149914800-149922400 Strong transcription Foreskin Fibroblast Primary Cells skin01 Skin
35 chr1:149914800-149922400 Strong transcription HSMMtube muscle
36 chr1:149914800-149922600 Strong transcription Fetal Muscle Trunk muscle
37 chr1:149914800-149924600 Strong transcription H9 Derived Neuron Cultured Cells ES cell derived
38 chr1:149915000-149917600 Strong transcription Muscle Satellite Cultured Cells --
39 chr1:149915000-149917600 Strong transcription Fetal Brain Female brain
40 chr1:149915000-149922600 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
41 chr1:149915000-149922600 Strong transcription Placenta Placenta
42 chr1:149915000-149922800 Strong transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
43 chr1:149915000-149923600 Strong transcription Breast Myoepithelial Primary Cells Breast
44 chr1:149915000-149937600 Weak transcription Primary T killer naive cells fromperipheralblood blood
45 chr1:149915200-149922400 Strong transcription Duodenum Smooth Muscle Duodenum
46 chr1:149915200-149922600 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
47 chr1:149915200-149923600 Strong transcription Liver Liver
48 chr1:149915400-149916400 Strong transcription Brain Inferior Temporal Lobe brain
49 chr1:149915400-149916800 Strong transcription Brain Dorsolateral Prefrontal Cortex brain
50 chr1:149915400-149917200 Strong transcription Rectal Smooth Muscle rectum

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Last update: Aug 31, 2015