The 2.0 version of rSNPBase

Variant report

Variant rs73006327
Chromosome Location chr1:149904568-149904569
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:84 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:149900400-149906400 Genic enhancers Fetal Intestine Small intestine
2 chr1:149900400-149907800 Weak transcription Esophagus oesophagus
3 chr1:149900400-149907800 Weak transcription Pancreas Pancrea
4 chr1:149900400-149908400 Weak transcription H1 Derived Neuronal Progenitor Cultured Cells ES cell derived
5 chr1:149900600-149906200 Genic enhancers Fetal Intestine Large intestine
6 chr1:149900600-149906200 Weak transcription Left Ventricle heart
7 chr1:149900600-149907600 Weak transcription Fetal Brain Male brain
8 chr1:149900600-149907800 Weak transcription Pancreatic Islets Pancreatic Islet
9 chr1:149900600-149908200 Weak transcription Right Ventricle heart
10 chr1:149900600-149908400 Weak transcription H9 Cell Line embryonic stem cell
11 chr1:149900800-149905600 Weak transcription Brain Substantia Nigra brain
12 chr1:149900800-149905600 Strong transcription Duodenum Smooth Muscle Duodenum
13 chr1:149900800-149905800 Weak transcription Skeletal Muscle Male skeletal muscle
14 chr1:149900800-149905800 Weak transcription Skeletal Muscle Female skeletal muscle
15 chr1:149900800-149906400 Weak transcription Adipose Nuclei Adipose
16 chr1:149900800-149907200 Weak transcription HepG2 liver
17 chr1:149900800-149907600 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
18 chr1:149900800-149907600 Weak transcription Liver Liver
19 chr1:149900800-149907800 Weak transcription Brain Germinal Matrix brain
20 chr1:149900800-149907800 Weak transcription HSMM muscle
21 chr1:149900800-149908000 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
22 chr1:149900800-149908200 Weak transcription HUES6 Cell Line embryonic stem cell
23 chr1:149901000-149906000 Strong transcription Breast Myoepithelial Primary Cells Breast
24 chr1:149901000-149906000 Weak transcription Small Intestine intestine
25 chr1:149901000-149906000 Strong transcription Stomach Smooth Muscle stomach
26 chr1:149901000-149906200 Strong transcription Placenta Placenta
27 chr1:149901000-149906600 Strong transcription Cortex derived primary cultured neurospheres brain
28 chr1:149901000-149907800 Weak transcription Brain Angular Gyrus brain
29 chr1:149901200-149904600 Strong transcription Placenta Amnion Placenta Amnion
30 chr1:149901200-149909000 Weak transcription GM12878-XiMat blood
31 chr1:149901400-149906200 Strong transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
32 chr1:149901400-149906200 Strong transcription Foreskin Melanocyte Primary Cells skin03 Skin
33 chr1:149901600-149906200 Strong transcription Ovary ovary
34 chr1:149901600-149906400 Strong transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
35 chr1:149901600-149907400 Weak transcription Stomach Mucosa stomach
36 chr1:149901600-149908200 Weak transcription Fetal Thymus thymus
37 chr1:149901800-149905400 Weak transcription Spleen Spleen
38 chr1:149901800-149906000 Strong transcription Fetal Muscle Trunk muscle
39 chr1:149901800-149906400 Strong transcription Brain Cingulate Gyrus brain
40 chr1:149902200-149906600 Strong transcription Fetal Stomach stomach
41 chr1:149902600-149907600 Weak transcription Brain Hippocampus Middle brain
42 chr1:149902800-149904600 Transcr. at gene 5' and 3' Rectal Mucosa Donor 31 rectum
43 chr1:149903400-149905200 Genic enhancers Duodenum Mucosa Duodenum
44 chr1:149903600-149905600 Strong transcription Fetal Kidney kidney
45 chr1:149903600-149906000 Strong transcription NHDF-Ad bronchial
46 chr1:149903800-149904600 Enhancers Primary monocytes fromperipheralblood blood
47 chr1:149903800-149905600 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
48 chr1:149903800-149905600 Strong transcription Fetal Muscle Leg muscle
49 chr1:149903800-149906200 Strong transcription H1 Derived Mesenchymal Stem Cells ES cell derived
50 chr1:149903800-149906200 Strong transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow

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Last update: Aug 31, 2015