The 2.0 version of rSNPBase

Variant report

Variant rs59934949
Chromosome Location chr1:149967731-149967732
allele C/T
Outlinks Ensembl   UCSC
Chromatin state (count:97 , 50 per page) page: 1 2
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:149948200-149973000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
2 chr1:149948200-149977400 Weak transcription Fetal Muscle Trunk muscle
3 chr1:149948200-149981000 Weak transcription Primary T cells fromperipheralblood blood
4 chr1:149948400-149967800 Weak transcription iPS-20b Cell Line embryonic stem cell
5 chr1:149948400-149969400 Weak transcription Primary T helper cells fromperipheralblood blood
6 chr1:149948400-149971600 Weak transcription Fetal Brain Male brain
7 chr1:149948400-149981400 Weak transcription Esophagus oesophagus
8 chr1:149949400-149975400 Weak transcription Placenta Placenta
9 chr1:149949600-149968200 Weak transcription Rectal Mucosa Donor 31 rectum
10 chr1:149949600-149968400 Weak transcription hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
11 chr1:149949600-149968600 Weak transcription K562 blood
12 chr1:149949600-149974400 Weak transcription Primary Natural Killer cells fromperipheralblood blood
13 chr1:149952000-149968000 Weak transcription Rectal Mucosa Donor 29 rectum
14 chr1:149952200-149980800 Weak transcription Primary T regulatory cells fromperipheralblood blood
15 chr1:149953000-149969400 Weak transcription Duodenum Mucosa Duodenum
16 chr1:149953000-149978800 Weak transcription Pancreas Pancrea
17 chr1:149953600-149968000 Weak transcription A549 lung
18 chr1:149956600-149968000 Weak transcription Fetal Intestine Large intestine
19 chr1:149956600-149968800 Weak transcription Fetal Muscle Leg muscle
20 chr1:149957800-149978600 Weak transcription Spleen Spleen
21 chr1:149958200-149972000 Weak transcription H1 BMP4 Derived Trophoblast Cultured Cells ES cell derived
22 chr1:149958800-149968600 Weak transcription Stomach Smooth Muscle stomach
23 chr1:149958800-149973400 Weak transcription Aorta Aorta
24 chr1:149959400-149967800 Weak transcription Fetal Heart heart
25 chr1:149959400-149968200 Weak transcription H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
26 chr1:149959400-149975800 Weak transcription Fetal Kidney kidney
27 chr1:149959600-149975400 Weak transcription Foreskin Fibroblast Primary Cells skin02 Skin
28 chr1:149960000-149975400 Weak transcription Hela-S3 cervix
29 chr1:149960600-149968000 Weak transcription HSMMtube muscle
30 chr1:149960800-149968000 Weak transcription NHLF lung
31 chr1:149960800-149969400 Weak transcription Liver Liver
32 chr1:149961000-149968600 Weak transcription Fetal Lung lung
33 chr1:149961200-149967800 Weak transcription HepG2 liver
34 chr1:149963800-149968600 Weak transcription Rectal Smooth Muscle rectum
35 chr1:149964600-149972000 Enhancers Brain Hippocampus Middle brain
36 chr1:149965000-149967800 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
37 chr1:149965000-149968600 Enhancers Brain Cingulate Gyrus brain
38 chr1:149965000-149972400 Enhancers Brain Angular Gyrus brain
39 chr1:149965000-149978400 Genic enhancers Foreskin Melanocyte Primary Cells skin03 Skin
40 chr1:149965000-149981400 Weak transcription H1 Derived Mesenchymal Stem Cells ES cell derived
41 chr1:149965200-149969000 Enhancers Breast Myoepithelial Primary Cells Breast
42 chr1:149965200-149972200 Weak transcription Fetal Intestine Small intestine
43 chr1:149965200-149976000 Weak transcription Lung lung
44 chr1:149965400-149969000 Enhancers Foreskin Fibroblast Primary Cells skin01 Skin
45 chr1:149965400-149971400 Weak transcription Fetal Stomach stomach
46 chr1:149965400-149975600 Weak transcription Sigmoid Colon Sigmoid Colon
47 chr1:149965600-149968800 Enhancers Breast variant Human Mammary Epithelial Cells (vHMEC) Breast
48 chr1:149965800-149968000 Weak transcription H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
49 chr1:149966000-149967800 Weak transcription NHDF-Ad bronchial
50 chr1:149966200-149967800 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived

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Last update: Aug 31, 2015